DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rala and rap1b

DIOPT Version :10

Sequence 1:NP_525063.1 Gene:Rala / 31332 FlyBaseID:FBgn0015286 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_955827.1 Gene:rap1b / 321107 ZFINID:ZDB-GENE-030131-9662 Length:184 Species:Danio rerio


Alignment Length:191 Identity:90/191 - (47%)
Similarity:136/191 - (71%) Gaps:11/191 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 76
            :|::::|||||||||||:||:...|||.|:||..|||||:|.:||::..::||||||.|.:.|:|
Zfish     4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR 68

  Fly    77 DNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQL 141
            |.|.::|:||..|:|||...:|...|:.||||||||..:.:|.:||||||||.|:|.|...:.|.
Zfish    69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKGTDDVPMILVGNKCDLEDERVVGKEQGQN 133

  Fly   142 RAQQW-AVPYVETSAKTRENVDKVFFDLMREIRSRKTEDSKATSGRAKDRCKKRRLKCTLL 201
            .|:|| :..::|:|||::.||:::|:||:|:| :|||    ..:|:     .:::..|.||
Zfish   134 LARQWNSCAFLESSAKSKINVNEIFYDLVRQI-NRKT----PVTGK-----PRKKSTCQLL 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RalaNP_525063.1 RalA_RalB 12..174 CDD:206710 83/162 (51%)
rap1bNP_955827.1 Rap1 3..167 CDD:133375 83/163 (51%)
Effector region. /evidence=ECO:0000305 32..40 4/7 (57%)

Return to query results.
Submit another query.