DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-alpha and Chl1

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:XP_038964701.1 Gene:Chl1 / 89828 RGDID:620122 Length:1224 Species:Rattus norvegicus


Alignment Length:521 Identity:107/521 - (20%)
Similarity:180/521 - (34%) Gaps:177/521 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PEFVESISNVSVAVGRDATFTCHVRHLGGYRVGWLKADT-----KAIQAIHENVITHNPRVTVSH 101
            |..:.|.|:.:|..|......|....|...::.|.|..:     :|...|||.            
  Rat   256 PAQIGSASSKTVLKGDTLLLECFAEGLPTPQIEWSKLGSELPKGRATIEIHEK------------ 308

  Fly   102 LDQNTWNLHIKAVSEEDRGGYMCQLNTDPMKSQIGFLDVVI--PPDFISEDTSSDVIVPEGSSVR 164
                  .|.|:.||.:|||.|.|..|....|:...| .|::  ||.:..:..|:  :...||:..
  Rat   309 ------TLKIENVSYQDRGNYRCTANNLLGKASHDF-HVIVEEPPRWKKKPQSA--VYSTGSNGI 364

  Fly   165 LTCRARGYPEPIVTWRREDGNEIVLKDNVGTKTLAPSFRGEV-----LKLSKISRNEMGSYLCIA 224
            |.|.|.|.|:|.:.||   .|.:.::::        .|.|:|     :..:.:..|....|.|.|
  Rat   365 LLCEAEGEPQPTIKWR---VNGLPIENH--------PFPGDVMFPREISFTNLQPNHTAVYQCEA 418

  Fly   225 SNGVPPSVSKRISLS-IHFHPVIQVPN-QLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVT 287
            || :..::....::. :...|:||..| :.....:|....:.|...||||:...|........:.
  Rat   419 SN-IHGTILANANIDVVDVVPLIQTKNEENYETVVGYSAFLHCEYFASPKATVVWEVADETHPLE 482

  Fly   288 SGKYHVQESSQSMYETKMSMIVRKFQKDDVGSYRCIAKNSLG--------EVDSSIRLYEIPGPN 344
            .|:||..|:.        ::.:.:..::|.|||.|...|::|        ::.::.:|...|   
  Rat   483 GGRYHTHENG--------TLEIERTTEEDAGSYSCWVDNTMGKAVITANLDIRNATKLRVFP--- 536

  Fly   345 RNKNP------------------------------------LNGGGKG----GGAG--------- 360
              |||                                    :||...|    .||.         
  Rat   537 --KNPRIPKSHVLELYCESQCDSHLKHSLKLSWSKDGEAFEMNGTEDGRIVIDGANLTISNISGE 599

  Fly   361 -------------------------GSLDADANDILKQKQ--QVKVTYQPEDEE----LQYGSVE 394
                                     |..|...|.:|.::|  .|:::::..|:.    .:|  :.
  Rat   600 DQGIYSCSAQTALDSTSGKTQVTVLGVPDPPRNLLLSERQNRSVRLSWEAGDDHNSKISEY--IV 662

  Fly   395 DFEA---EGGEGGGLT-----------PLSPHVYY----TSGNKPATHKPGNSGGNQHLHQQHHH 441
            :||.   |.|:...||           ||:|:|.|    |:.|:.         |..|..|...|
  Rat   663 EFEGNREEPGKWEELTRVRGEETDVVLPLAPYVRYQFRVTAVNEV---------GKSHSSQPSDH 718

  Fly   442 H 442
            |
  Rat   719 H 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 21/84 (25%)
Ig 51..131 CDD:299845 20/84 (24%)
I-set 144..240 CDD:254352 22/101 (22%)
IGc2 159..228 CDD:197706 20/73 (27%)
Ig 244..337 CDD:299845 22/101 (22%)
I-set 244..337 CDD:254352 22/101 (22%)
Chl1XP_038964701.1 Ig 34..125 CDD:416386
Ig strand A 34..38 CDD:409353
Ig strand A' 43..47 CDD:409353
Ig strand B 52..59 CDD:409353
Ig strand C 65..70 CDD:409353
Ig strand C' 73..75 CDD:409353
Ig strand D 81..84 CDD:409353
Ig strand E 89..93 CDD:409353
Ig strand F 104..112 CDD:409353
Ig strand G 115..125 CDD:409353
IgI_2_L1-CAM_like 134..224 CDD:409432
Ig strand B 148..152 CDD:409432
Ig strand C 162..166 CDD:409432
Ig strand E 185..189 CDD:409432
Ig strand F 200..205 CDD:409432
Ig strand G 216..219 CDD:409432
Ig 261..343 CDD:416386 25/100 (25%)
Ig strand B 273..277 CDD:409353 0/3 (0%)
Ig strand C 286..290 CDD:409353 0/3 (0%)
Ig strand E 308..312 CDD:409353 1/21 (5%)
Ig strand F 322..327 CDD:409353 2/4 (50%)
Ig strand G 335..338 CDD:409353 0/2 (0%)
Ig4_L1-NrCAM_like 347..434 CDD:409367 21/100 (21%)
Ig strand B 363..367 CDD:409367 1/3 (33%)
Ig strand C 376..380 CDD:409367 0/3 (0%)
Ig strand E 399..403 CDD:409367 0/3 (0%)
Ig strand F 413..418 CDD:409367 2/4 (50%)
Ig strand G 426..429 CDD:409367 0/2 (0%)
Ig 447..524 CDD:416386 18/84 (21%)
Ig strand A' 447..451 CDD:409353 0/3 (0%)
Ig strand B 454..463 CDD:409353 1/8 (13%)
Ig strand C 469..474 CDD:409353 1/4 (25%)
Ig strand C' 477..480 CDD:409353 0/2 (0%)
Ig strand D 485..490 CDD:409353 2/4 (50%)
Ig strand E 491..498 CDD:409353 0/14 (0%)
Ig strand F 505..513 CDD:409353 4/7 (57%)
Ig strand G 516..524 CDD:409353 1/7 (14%)
Ig 528..627 CDD:416386 11/103 (11%)
Ig strand A 528..534 CDD:409353 1/5 (20%)
Ig strand A' 537..542 CDD:409353 3/4 (75%)
Ig strand B 545..553 CDD:409353 0/7 (0%)
Ig strand C 564..568 CDD:409353 0/3 (0%)
Ig strand D 583..586 CDD:409353 0/2 (0%)
Ig strand E 589..593 CDD:409353 1/3 (33%)
Ig strand F 602..609 CDD:409353 0/6 (0%)
Ig strand G 616..620 CDD:409353 0/3 (0%)
FN3 627..716 CDD:238020 23/99 (23%)
fn3 730..811 CDD:394996
FN3 832..926 CDD:238020
FN3 931..1026 CDD:238020
Bravo_FIGEY 1120..1201 CDD:404722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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