DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-alpha and robo4

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:XP_689255.3 Gene:robo4 / 560765 ZFINID:ZDB-GENE-020809-1 Length:1134 Species:Danio rerio


Alignment Length:339 Identity:87/339 - (25%)
Similarity:128/339 - (37%) Gaps:87/339 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PEFVESISNVSVAVGRDATFTCHVRHLGGYRVGWLK----ADTKAIQA----------------- 85
            |..|...|:|.|.||..||.:|.........:.||:    .||..:.|                 
Zfish    71 PRIVHHPSDVVVRVGSPATLSCRAEGNPEPTIQWLRNGQPLDTDKMDAQSQPIVLPDGSLFFFSV 135

  Fly    86 -------IHENV---ITHNPRVTVSHLDQNTWNLHIKAVSEEDRGGYMCQLNTDPMKSQIGFLDV 140
                   .||.|   |.||   ::.:......:|||.|:.|:.|                     
Zfish   136 VPGRKGQSHEAVYACIAHN---SIGNATSRNASLHIAALREDFR--------------------- 176

  Fly   141 VIPPDFISEDTSSDVIVPEGSSVRLTCRAR-GYPEPIVTWRREDGNEIVLKDNVGTKTLAPSFRG 204
             :.|        |||.|..|....:.|... |:|||.||||: ||  |::..:....|   ..:|
Zfish   177 -VQP--------SDVEVAIGEMATINCSPPVGHPEPNVTWRK-DG--ILINSSNEHYT---ELKG 226

  Fly   205 EVLKLSKISRNEMGSYLCIASNGVPPSVSKRISLSIHFHPVIQVPNQLVGAPLGTDVQIECHVEA 269
            ::: ::...:|:.|.|.|||||.:....|:...||:...||:....:.|...||...|..|..:.
Zfish   227 KLI-IAPAQKNDSGVYSCIASNMIGVRESRAARLSVLAKPVLLRKPEDVSVQLGESAQFFCEADG 290

  Fly   270 SPKSINYWIKDTGEMIVTSGKYHV--QESSQSMYETKMSMIVRKFQKDDVGSYRCIAKNSLG-EV 331
            .|.....|.::.|.:  .:|:|.:  ..|.|..|.|          ..|:|.|.|..:|.|| .|
Zfish   291 DPMPSIEWSREQGPL--PNGRYLINPDHSLQIHYVT----------AQDMGRYSCTVENKLGVSV 343

  Fly   332 DSSIRLYEIPGPNR 345
            .|:..|.|..|..|
Zfish   344 ASAQLLVEDAGGTR 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 25/110 (23%)
Ig 51..131 CDD:299845 24/110 (22%)
I-set 144..240 CDD:254352 30/96 (31%)
IGc2 159..228 CDD:197706 23/69 (33%)
Ig 244..337 CDD:299845 25/95 (26%)
I-set 244..337 CDD:254352 25/95 (26%)
robo4XP_689255.3 Ig1_Robo 70..169 CDD:143317 23/100 (23%)
I-set 71..168 CDD:254352 22/99 (22%)
I-set 175..261 CDD:254352 31/122 (25%)
Ig2_Robo 177..261 CDD:143201 30/98 (31%)
I-set 265..350 CDD:254352 25/96 (26%)
Ig 282..350 CDD:299845 20/79 (25%)
FN3 373..448 CDD:214495
FN3 472..560 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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