DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-alpha and robo2

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster


Alignment Length:569 Identity:121/569 - (21%)
Similarity:194/569 - (34%) Gaps:155/569 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KRLLRN--------FQFTSCDRNGKMLIHLLLIVSLLEA---IGAFQ---PEFVESISNVSVAVG 56
            ||..||        .:....||:.:.:..|||:::.|..   :||.:   |..:|...:.:|...
  Fly    41 KRRHRNNRDFHGERLKIMPVDRSRRAVFPLLLLLAGLNGLTQVGALKGENPRIIEHPMDTTVPKN 105

  Fly    57 RDATFTCHVRHLGGYRVGW------LKADTKA------------IQAIHEN-------------- 89
            ...||.|.........:.|      ||.||.:            ::.||..              
  Fly   106 DPFTFNCQAEGNPTPTIQWFKDGRELKTDTGSHRIMLPAGGLFFLKVIHSRRESDAGTYWCEAKN 170

  Fly    90 ----VITHNPRVTVSHL-------------------------------DQNTW------------ 107
                ..:.|..:.|:.|                               .|.:|            
  Fly   171 EFGVARSRNATLQVAFLRDEFRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGN 235

  Fly   108 ---------NLHIKAVSEEDRGGYMCQLN--TDPMKSQIGFLDVVIPPDFISEDTSSDVIVPEGS 161
                     ||.|:...:.|.|.|.|.:.  ....:|...||.|.:.|..|....:...:|  ||
  Fly   236 KRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVRPFLIRGPQNQTAVV--GS 298

  Fly   162 SVRLTCRARGYPEPIVTWRR--EDGNEIVLKDNVGTKTLAPSFRGEVLKLSKISRNEMGSYLCIA 224
            ||...||..|.|.|.|.|||  ..||..:.:.:|        .....|||..::..:||.|.|.|
  Fly   299 SVVFQCRIGGDPLPDVLWRRTASGGNMPLRRVHV--------LEDRSLKLDDVTLEDMGEYTCEA 355

  Fly   225 SNGVPPSVSKRISLSIHFHP--VIQVPNQLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVT 287
            .|.|....:..| |::|..|  ||:..||||  .:|.:|..||.....|:...||..:....::.
  Fly   356 DNAVGGITATGI-LTVHAPPKFVIRPKNQLV--EIGDEVLFECQANGHPRPTLYWSVEGNSSLLL 417

  Fly   288 SGKYHVQESSQSMYETKMSMIVRKFQKDDVGS-YRCIAKNSLGEVDSSIRL-----YEIPGPNRN 346
            .|....:.......|.:..:.:.:|.::|.|. ..|.|.|::|.|.|...:     :|:|.|...
  Fly   418 PGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAVGSVSSRTVVSVDTQFELPPPIIE 482

  Fly   347 KNPLNG---------------GGKGGGAGGSLDADANDILKQKQQ---------VKVTYQPEDEE 387
            :.|:|.               |.........||....|:.:.:::         :....:.|||.
  Fly   483 QGPVNQTLPVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRHEDEG 547

  Fly   388 LQYGSVEDFEAEGGEGGGL---TPLSPHVYYTSGNKPATHKPGNSGGNQ 433
            |......:...:....|.|   ||.:|::.:....:.:|: ||..|..|
  Fly   548 LYTCVASNRNGKSSWSGYLRLDTPTNPNIKFFRAPELSTY-PGPPGKPQ 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 23/169 (14%)
Ig 51..131 CDD:299845 23/169 (14%)
I-set 144..240 CDD:254352 31/97 (32%)
IGc2 159..228 CDD:197706 25/70 (36%)
Ig 244..337 CDD:299845 25/95 (26%)
I-set 244..337 CDD:254352 25/95 (26%)
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 14/94 (15%)
I-set 91..184 CDD:254352 14/92 (15%)
I-set 190..279 CDD:254352 12/88 (14%)
Ig2_Robo 193..279 CDD:143201 12/85 (14%)
I-set 283..370 CDD:254352 31/97 (32%)
Ig 300..370 CDD:299845 25/78 (32%)
Ig 388..>457 CDD:299845 14/68 (21%)
I-set 479..561 CDD:254352 11/81 (14%)
Ig 496..561 CDD:143165 8/64 (13%)
FN3 588..681 CDD:238020 4/8 (50%)
FN3 <817..856 CDD:238020
fn3 864..952 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12231
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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