DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-alpha and Dscam2

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster


Alignment Length:574 Identity:131/574 - (22%)
Similarity:205/574 - (35%) Gaps:130/574 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RNFQFTSCDRNGKMLIHLLLIVSLLEAIGAFQPEFVESISNVSVAVGRDATFTCHVRHLGG---Y 71
            ||.|..|..|:|::.:    ||.  ..:..||...::      :.:|..|:.||.|  :.|   .
  Fly   593 RNKQGHSARRSGEVTV----IVP--PKLSPFQTNILQ------LNMGDRASLTCSV--VKGDLPL 643

  Fly    72 RVGWLKADTKAIQAIHENVITHNPRVTVSHLDQNTWNLHIKAVSEEDRGGYMCQLNTDPMK---S 133
            .:.|.| |.:.|..        ...::|..:||....|.|:.:..:..|.|.|.:.....:   |
  Fly   644 TINWRK-DGRPIDP--------TQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENS 699

  Fly   134 QIGFLDVVIPPDFISEDTSSDVIVPEGSSVRLTCRARGYPEPIVTWRREDGNEI----VLKDNVG 194
            |.  |.|.:||.:|.|..  |..|.....:.|.|:|:|.|.|.:.|::..|::.    .:::...
  Fly   700 QA--LLVNVPPRWIVEPV--DANVERNRHIMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPF 760

  Fly   195 TKTLAPSFRGEVLKLSKISRNEMGSYLCIASNGVPPSVSKRISLSIHFHPVIQVPNQLVGAPLGT 259
            ||.|.   .|.:| |..:..:..|.|||.|:||:...:.|.|.|.::..|.....::.|....|.
  Fly   761 TKLLG---NGSLL-LQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGD 821

  Fly   260 DVQIECHVEASPKSIN-YWIKDTGEMIVTSGKYHV---QESSQSMYETKMSMIVRKFQKDDVGSY 320
            ...::|.| :..|.|| .|::.....:..|..|.:   ||::......::.  :|.....|.|.|
  Fly   822 TALLQCAV-SGDKPINIVWMRSGKNTLNPSTNYKISVKQEATPDGVSAELQ--IRTVDATDSGPY 883

  Fly   321 RCIAKNSLGEVDSSIRLYEIPGPNRNKNPLNGGGKGGGAGGSLDADANDILKQKQQVKVTYQPED 385
            .|.|.|..|.....::| ::..|     ||        ....|:|    .:...:.|.:.:||  
  Fly   884 FCRASNLYGNDQQLVQL-QVQEP-----PL--------PPSVLEA----AMISSRSVNIKWQP-- 928

  Fly   386 EELQYGSVEDFEAEGGEGGGLTPLS--------------PHVYYTSGN-KPATH---------KP 426
            :.|..|.|..:..|..|.....|.:              ||......| ||||.         ..
  Fly   929 KTLGTGDVTKYIVEFREADHSLPPALFVDQWQQIEVKDPPHFNAMIENLKPATRYAFRVIAEGSA 993

  Fly   427 GNSGGNQHLHQQHHHHHHHNNNNNNQQHSGGPGGGPTGGDAGSLGGE---MGGITRKPPPYYG-- 486
            |.|..:|.|..:.....              |.|.|....|..|...   :..:...|...:|  
  Fly   994 GRSAPSQELIVRTEPQR--------------PAGPPLSLSARPLSSTELLISWVAPLPELRHGDI 1044

  Fly   487 ------------GNTEVRGPIDNNEMSSGSGDSRLCRGHHLPILLLPFARLILV 528
                        |||..     |....||.||..  .|..|...|..|||..:|
  Fly  1045 QGYNVGYKLSSSGNTAY-----NFTSVSGDGDGG--NGELLLSGLAKFARYTVV 1091

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 18/82 (22%)
Ig 51..131 CDD:299845 18/82 (22%)
I-set 144..240 CDD:254352 29/99 (29%)
IGc2 159..228 CDD:197706 20/72 (28%)
Ig 244..337 CDD:299845 21/96 (22%)
I-set 244..337 CDD:254352 21/96 (22%)
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352
IGc2 344..407 CDD:197706
IG_like 432..517 CDD:214653
IGc2 436..507 CDD:197706
I-set 521..610 CDD:254352 6/20 (30%)
IGc2 533..597 CDD:197706 2/3 (67%)
Ig 630..699 CDD:143165 17/79 (22%)
IG_like 714..802 CDD:214653 26/93 (28%)
Ig 725..802 CDD:299845 24/80 (30%)
Ig 823..894 CDD:143165 18/73 (25%)
FN3 906..1006 CDD:238020 24/113 (21%)
FN3 1013..1111 CDD:238020 21/86 (24%)
FN3 1119..1209 CDD:238020
FN3 1219..1313 CDD:238020
Ig 1336..1402 CDD:143165
FN3 1409..1498 CDD:238020
FN3 1515..1588 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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