DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-alpha and dscamb

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:487 Identity:104/487 - (21%)
Similarity:161/487 - (33%) Gaps:142/487 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PEFVESISNVSVAVGRDATFTCHVRHLGG---YRVGWLKADTKAIQAIHENVITHNPRVTVSHLD 103
            |..::...:.|.::|:.....|.|  :.|   ..:.|.| |.:.|.|        :..||:.::|
Zfish   595 PPLIQHSDSQSASIGQRVFIPCVV--ISGDLPMSITWHK-DGRPINA--------SLGVTIDNID 648

  Fly   104 QNTWNLHIKAVSEEDRGGYMCQLNTDPMKSQIGF-LDVVIPPDFISEDTSSDVIVPEGSSVRLTC 167
             .|.:|.|..:||...|.|.|....:....:... |.|.:||.|..:....|.|.  |.||.|.|
Zfish   649 -FTSSLRISNLSEIHNGSYTCIARNEAAAVEHSIQLIVKVPPHFEVQPKDQDGIY--GKSVTLNC 710

  Fly   168 RARGYPEPIVTWRREDG------NEIVLKDNVGTKTLAPSFRGEVLKLSKISRNEMGSYLCIASN 226
            .|:|.|.|.:.|....|      ..|.|......:.|.   .|.:| :..:...:.|.|||..||
Zfish   711 SAKGNPIPTIVWNHSKGAGVPQFQPIALNSGSRVQLLE---NGSLL-IKHVLEEDAGFYLCKVSN 771

  Fly   227 GVPPSVSKRISLSIHFHPVIQVPNQLVGAPLGTDVQIEC--HVEASPKSINYWIKDTGEMIVTSG 289
            .|...:||.:.|::....:|........|..|...::.|  |.| .|..:. |.|::        
Zfish   772 DVGADISKSMYLTVKIPAMITSYPNTTRAEQGHMTEMSCTAHGE-KPIKVR-WEKES-------- 826

  Fly   290 KYHVQESSQSMY---------ETKMSMIVRKFQKDDVGSYRCIAKNSLGEVDSSIRL--YEIPGP 343
              |:.....|.|         |...::.:....::|.|.:.|||.||.||....|:|  .:.|.|
Zfish   827 --HIINPDMSRYVVTVKEVGDEVISTLQILHTVREDSGFFSCIAINSYGEDKGIIQLIVQDRPDP 889

  Fly   344 NR--------------------NKNPLNG------GGKGGGAGGSLDADANDILKQ--------- 373
            ..                    ..:|:.|      ......|...:..|.:..|.|         
Zfish   890 PEVEIREVKDRTIALRWTMGFDGNSPITGYDINYKNKSASWASSQMTKDVSPQLNQATIIELHPA 954

  Fly   374 --------------------------------------------KQQVKVTYQPEDEELQYGSVE 394
                                                        .|.:|||::|..:.||.|.:.
Zfish   955 STYNIRMFAKNQIGESRPSNELTITTDEAPPDGAPQDVQLEAISSQGIKVTWKPPHKHLQNGLIR 1019

  Fly   395 DFEA---EGGEGGGLTPLSPHVYYTSGNKPAT 423
            .::.   |.|.||     ||.  |.:.|...|
Zfish  1020 SYQVCYREFGTGG-----SPQ--YNTINVDTT 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 21/82 (26%)
Ig 51..131 CDD:299845 21/82 (26%)
I-set 144..240 CDD:254352 30/101 (30%)
IGc2 159..228 CDD:197706 22/74 (30%)
Ig 244..337 CDD:299845 23/103 (22%)
I-set 244..337 CDD:254352 23/103 (22%)
dscambXP_009289749.1 I-set 132..198 CDD:254352
I-set 225..310 CDD:254352
IGc2 239..300 CDD:197706
IG_like 320..400 CDD:214653
IGc2 328..391 CDD:197706
IG_like 417..501 CDD:214653
Ig 424..498 CDD:143165
IG_like 511..592 CDD:214653
IGc2 518..576 CDD:197706
I-set 595..685 CDD:254352 23/101 (23%)
Ig 612..682 CDD:143165 19/81 (23%)
I-set 689..785 CDD:254352 30/101 (30%)
Ig7_DSCAM 706..785 CDD:143211 24/82 (29%)
IG_like 795..883 CDD:214653 23/99 (23%)
Ig 803..890 CDD:299845 23/98 (23%)
FN3 887..980 CDD:238020 8/92 (9%)
FN3 987..1084 CDD:238020 17/65 (26%)
FN3 1092..1185 CDD:238020
FN3 1190..1279 CDD:238020
IGc2 1302..1367 CDD:197706
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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