DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-alpha and itgb4

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:XP_005166847.1 Gene:itgb4 / 335269 ZFINID:ZDB-GENE-030131-7209 Length:1931 Species:Danio rerio


Alignment Length:470 Identity:94/470 - (20%)
Similarity:152/470 - (32%) Gaps:152/470 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 RNGKMLIHLLLIVSLLEAIGAFQ-PEFVESIS------------------------NVSVA-VGR 57
            |:.|::.....:.|..||.||.: ||.|||:.                        .|.:| :|:
Zfish   913 RDLKVIPGYYTVASDKEAAGAVEFPENVESVDVRVPLFIKDEDDEKKELLVQAVDVPVGIAKIGK 977

  Fly    58 DATFTCHVRHLGGYRVGWLKADTKAIQAIHENVITHNPRVTVSHLDQNTWNLHIKAVSEEDRGGY 122
            |     ||      .:..||....::....|      |..|.|..| ...|:.||....||....
Zfish   978 D-----HV------NITVLKEQASSVFTFLE------PSYTYSRQD-GVANIPIKRQIIEDGRAQ 1024

  Fly   123 M----CQLNTDPMKSQI----------GFLDVVIP--------PDFISEDTSSDVIVPEGSSVRL 165
            :    ..|.....|..|          |..:.::|        .|.:.||......|.:.::.|.
Zfish  1025 VTYSTADLTAKDKKDYISVDGDLSYGAGETEKIVPVKLLELGEQDGLLEDKQVKQFVMDLTNPRQ 1089

  Fly   166 TCRARGYPEPIVTWR-REDGNEIVLKDNVGTKTLAPSFRGEVL--------------KLSKISRN 215
            :.:...||..::|.. :.:.:.:..|.:..|.:...|.....:              :.:|.||.
Zfish  1090 SAKLGRYPRTVITIADKPESSVMAFKKSTQTFSTTDSLYTIPVERTGNRETPATVHWRTNKASRF 1154

  Fly   216 EMGSYLCIASNGVPPSVSKRISLSIHFHPVIQVPNQLVGAPLGTDVQIECHVEASPKSINYWI-- 278
            ::.|.|..|    |....|.|.::...||...:|.:.             ::|....|.|..|  
Zfish  1155 DISSPLKFA----PGEAEKNILINPRTHPSPIIPEKF-------------NLELLDPSNNAIIGK 1202

  Fly   279 KDTGEMIVT----SGKYHVQESSQSMYETKMSMIVRKFQKDDVGSYRCIAKNSLGEVDSSIRLYE 339
            :.|.|:|||    .||....:..:.:.:|..|...|.:...::.:.....||        |||..
Zfish  1203 RKTTEVIVTDGRGDGKNQDFQKMEYVTQTATSPGGRLYSPANIKAVATGPKN--------IRLNW 1259

  Fly   340 IPGPNRNKNPLNGGGKGGGAGGSLDADANDILKQKQQVKVTY----QPEDEELQYGSVEDFEAEG 400
            .|..|.|                             ..||.|    .||| :.::..|:..:|| 
Zfish  1260 KPSQNAN-----------------------------GYKVKYWIYGDPED-KAKFMDVKTPQAE- 1293

  Fly   401 GEGGGLTPLSPHVYY 415
                 ||.|.|:..|
Zfish  1294 -----LTNLDPYCDY 1303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 19/108 (18%)
Ig 51..131 CDD:299845 19/84 (23%)
I-set 144..240 CDD:254352 20/110 (18%)
IGc2 159..228 CDD:197706 13/83 (16%)
Ig 244..337 CDD:299845 19/98 (19%)
I-set 244..337 CDD:254352 19/98 (19%)
itgb4XP_005166847.1 Integrin_beta 37..457 CDD:278776
EGF_2 <468..490 CDD:285248
EGF_2 545..573 CDD:285248
Integrin_B_tail 625..709 CDD:285239
Calx-beta 991..1064 CDD:295344 15/79 (19%)
FN3 1242..1326 CDD:238020 22/106 (21%)
FN3 1331..1420 CDD:238020
fn3 1640..1720 CDD:278470
fn3 1751..1835 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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