DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-alpha and Lsamp

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:XP_030104997.1 Gene:Lsamp / 268890 MGIID:1261760 Length:392 Species:Mus musculus


Alignment Length:335 Identity:94/335 - (28%)
Similarity:148/335 - (44%) Gaps:40/335 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 EFVESISNVSVAVGRDATFTCHVRHLGGYRVGWLKADTKAIQAIHENVITHNPRVTVSHLDQNTW 107
            :|.....|::|..|..|...|.|..... :|.||.. :..|.|.|:. .:.:|||.:.......:
Mouse    64 DFNRGTDNITVRQGDTAILRCVVEDKNS-KVAWLNR-SGIIFAGHDK-WSLDPRVELEKRHALEY 125

  Fly   108 NLHIKAVSEEDRGGYMCQLNT--DPMKSQIGFLDVVIPPDFISEDTSSDVIVPEGSSVRLTCRAR 170
            :|.|:.|...|.|.|.|.:.|  :|..||: :|.|.:||..  .:.||||.|.|||:|.|.|.|.
Mouse   126 SLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKI--SNISSDVTVNEGSNVTLVCMAN 187

  Fly   171 GYPEPIVTWRREDGNEIVLKDNVGTKTLAPSFRG--EVLKLSKISRNEMGSYLCIASNGVPPSVS 233
            |.|||::|||.             ...|...|.|  |.|::..|:|.:.|.|.|.|:|.|..:..
Mouse   188 GRPEPVITWRH-------------LTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSADV 239

  Fly   234 KRISLSIHFHPVIQVPNQLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVTSGKYHVQESSQ 298
            |::.:::::.|.| ..::...|..|....::|...|.|.....|.:|...:...:|........|
Mouse   240 KQVKVTVNYPPTI-TESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQ 303

  Fly   299 SMYETKMSMIVRKFQKDDVGSYRCIAKNSLGEVDSSIRLYE-----IPGPNRNKNPL-----NGG 353
            |      |:.|....::..|:|.|:|.|.||..::|:.|::     :|.|.:.....     .|.
Mouse   304 S------SLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTVPHPIQEIGTTVHFKPKGP 362

  Fly   354 GKGGGAGGSL 363
            |...|..||:
Mouse   363 GSVRGINGSV 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 23/81 (28%)
Ig 51..131 CDD:299845 22/81 (27%)
I-set 144..240 CDD:254352 34/97 (35%)
IGc2 159..228 CDD:197706 26/70 (37%)
Ig 244..337 CDD:299845 22/92 (24%)
I-set 244..337 CDD:254352 22/92 (24%)
LsampXP_030104997.1 Ig 69..159 CDD:386229 27/93 (29%)
Ig_3 163..232 CDD:372822 31/83 (37%)
Ig_3 250..325 CDD:372822 18/81 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I12107
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 142 1.000 Inparanoid score I4449
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8732
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3058
SonicParanoid 1 1.000 - - X97
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.000

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