DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-alpha and Ptprq

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus


Alignment Length:543 Identity:93/543 - (17%)
Similarity:158/543 - (29%) Gaps:250/543 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 GYRVGWLKADTKAIQAIHENVITHNPR---VTVSHLDQNTWNLHIKAVSEEDRGGYMCQLNTDPM 131
            |..:.|           :|..|...|.   :.|..:|.:.:|:.....:||::            
Mouse  1556 GINISW-----------NEPAIITGPTFYLIDVKSVDNDNFNISFVKSNEENK------------ 1597

  Fly   132 KSQIGFLDV-----VIPPDFISE--------DTSSDVI------VPEGSSVRLTCRARGYPEPIV 177
            .::|..|:|     |:...|:..        .:|::||      ||:.....:|.:.  .|:.:.
Mouse  1598 TTEINDLEVFTRYSVVITAFVGNVSGAYTDGKSSAEVIITTLESVPKDPPNNMTFQK--IPDEVT 1660

  Fly   178 TWR-------REDGN-----EIVLKDNVGTKTLAPSFRGEVLKLSKISRNEMG------------ 218
            .::       :.:||     .:|.:::..|..       ::..||.|.:.:..            
Mouse  1661 KFQLSFLPPSQPNGNIQVYQALVYREDDPTAV-------QIHNLSIIQKTDTSVIAMLEGLKGGH 1718

  Fly   219 ----SYLCIASNGVPPSVSKRISLSIHFHPVIQVPNQLVGAPLGTDVQIECHVEASPKSINYWIK 279
                |...|.|.|..|.|..||::.|.             ||            |.||:....|.
Mouse  1719 TYNISVYAINSAGAGPKVQMRITMDIK-------------AP------------ARPKTKPIPIH 1758

  Fly   280 D-TGEMIVTSGKYHVQESSQSMYETKMSMIVRK---FQKDDVGSYR----CIAKNSLGEVDSSIR 336
            | ||:::|||                .::.:|.   :..||.|..|    .:|:....:..:..:
Mouse  1759 DATGKLLVTS----------------TTITIRMPICYYNDDHGPIRNVQVLVAEAGAQQDGNVTK 1807

  Fly   337 LYE-------------------------------------------IPGPNRNK----------- 347
            .|:                                           ||| |..|           
Mouse  1808 WYDAYFNKARPYFTNEGFPNPPCIEGKTKFSGNEEIYVIGADNACMIPG-NEEKICNGPLKPKKQ 1871

  Fly   348 --------------------NPLNGGGKGGG-------------------AGGSLDADANDILKQ 373
                                :|:...|:|..                   .|.::.|.|.  ::|
Mouse  1872 YLFKFRATNVMGQFTDSEYSDPIKTLGEGLSERTVEIILSVTLCILSIILLGTAIFAFAR--IRQ 1934

  Fly   374 KQQVKVTYQPEDEEL--------QYGSVEDFEAEGGEGGGLTPLSPHVYYTSGNKPATHKPGNSG 430
            ||:...||.|.|.|:        |..:|.|.|.:...   ||.|   :.|....||.:.|.    
Mouse  1935 KQKEGGTYSPRDAEIIDTKFKLDQLITVADLELKDER---LTRL---LSYRKSIKPVSKKS---- 1989

  Fly   431 GNQHLHQQHHHHHHHNNNNNNQQ 453
                 ..||......|||...|:
Mouse  1990 -----FLQHVEELCTNNNLKFQE 2007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 10/61 (16%)
Ig 51..131 CDD:299845 10/63 (16%)
I-set 144..240 CDD:254352 23/137 (17%)
IGc2 159..228 CDD:197706 12/96 (13%)
Ig 244..337 CDD:299845 18/100 (18%)
I-set 244..337 CDD:254352 18/100 (18%)
PtprqNP_001357916.1 FN3 57..151 CDD:238020
FN3 308..393 CDD:238020
fn3 399..>441 CDD:365830
FN3 570..654 CDD:238020
fn3 668..744 CDD:365830
FN3 762..850 CDD:238020
fn3 857..934 CDD:365830
FN3 951..1049 CDD:238020
FN3 1056..1137 CDD:238020
FN3 1152..1233 CDD:238020
FN3 1247..1337 CDD:238020
FN3 1342..1421 CDD:238020
FN3 1432..1535 CDD:238020
FN3 1542..1638 CDD:238020 18/104 (17%)
FN3 1645..1734 CDD:238020 13/97 (13%)
UP_III_II 1759..1928 CDD:297589 22/185 (12%)
R-PTPc-Q 2033..2256 CDD:350464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.