DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-alpha and rig-4

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:462 Identity:96/462 - (20%)
Similarity:169/462 - (36%) Gaps:115/462 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SNVSVAVGRDATFTCHVRHLGGYRVGWLKADTKAIQAIHENVITHNPRVTVSHLDQNTWNLH--- 110
            :.:...||...:..|.|:......:.|.|....        :.|...::|:..:.|:.:.|:   
 Worm   331 NEIQKTVGSSLSLKCSVKKKSSMDIKWYKNGLM--------MTTQRGKLTIDRIKQDDFGLYQCE 387

  Fly   111 -------------IK-------AVSEEDRGGYMCQ----LNTDPMKSQIGFLD------VVIPPD 145
                         :|       ..:|....|...:    :.|.|.: ::.|.|      .:.|  
 Worm   388 ATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEISMETPPPR-KLKFFDNSKSQEQLFP-- 449

  Fly   146 FISE--------DTSSDVIVPEGSS-VRLTCRARGYPEPIVTWRREDGNEIVLKDNVGTKTLAPS 201
            |.||        .|..|:.|..|:. :.:.|.|.|.|.|.:.|.. :|:|| ..|||     ...
 Worm   450 FTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIWLL-NGHEI-QTDNV-----KYD 507

  Fly   202 FRGEVLKLSKISRNEMGSYLC-IASNGVPPSVSKRI---SLSIHFHPVIQVPNQLVGAPLGTDVQ 262
            ...:.|.:..|.:::.|.|.| |:.:.|..:.:.::   || |.:.|..|      .:.:||:|:
 Worm   508 LTNDGLAIHDIRKSDEGEYTCEISGSNVKATANVQVNGDSL-IEYGPADQ------KSLIGTNVE 565

  Fly   263 IECHVE---ASPKSINYWIKDTGEMIVTSGKYHVQESSQSMYETKMSMIVRKFQKDDVGSYRCIA 324
            ..|.|.   ....|:.:::.|.  ::..:|...::.|.    ..|.|:|:|:...|:.|.|||..
 Worm   566 FSCEVAKEYVRKASVEWYLNDV--LLPVNGNSGLRISR----NRKGSLIIRQVGPDNTGEYRCRV 624

  Fly   325 KNSLGEVDSS--IRLYEIPG-PNRNKNPL-------------NGGGKGG-------------GAG 360
            .....|.::|  :::.|.|. |.|.:..|             |.|..|.             |..
 Worm   625 TVDGREENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFDGNEPIIKHAIEMRTMGPT 689

  Fly   361 GSLDADANDILKQ--KQQVKVTYQPEDEELQYGSVEDFE--AEGGEGGGLTPLSPHVYYTSGNKP 421
            | |.:|....:..  |::.|.....:.|:|:..|..:|.  |....|.| .|..|....|...:|
 Worm   690 G-LWSDWTTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVASNKHGPG-KPSLPSYSVTMPQQP 752

  Fly   422 ATHKPGN 428
            .:..|.|
 Worm   753 PSAAPRN 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 13/106 (12%)
Ig 51..131 CDD:299845 14/106 (13%)
I-set 144..240 CDD:254352 28/108 (26%)
IGc2 159..228 CDD:197706 19/70 (27%)
Ig 244..337 CDD:299845 22/97 (23%)
I-set 244..337 CDD:254352 22/97 (23%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 10/78 (13%)
IGc2 338..393 CDD:197706 9/62 (15%)
I-set 459..543 CDD:254352 23/90 (26%)
IGc2 478..534 CDD:197706 18/62 (29%)
IG_like 553..639 CDD:214653 22/97 (23%)
Ig 564..635 CDD:143165 17/76 (22%)
FN3 643..747 CDD:238020 22/105 (21%)
FN3 756..850 CDD:238020 2/4 (50%)
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.