DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-alpha and chl1b

DIOPT Version :9

Sequence 1:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster
Sequence 2:XP_017212175.2 Gene:chl1b / 100318566 ZFINID:ZDB-GENE-091105-1 Length:1294 Species:Danio rerio


Alignment Length:584 Identity:131/584 - (22%)
Similarity:207/584 - (35%) Gaps:139/584 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPVSAKRLLRNFQFTSCDRNGKMLIHLLL--IVSLLEAIGAFQPEFVESISNVSVAVGRDATFTC 63
            |.|.:.:|:::    |...:|:...:.||  ..|||...|      :|  |:..:..|.|....|
Zfish   231 MVVKSNKLMKD----SSSGSGRGYANSLLERKPSLLAPTG------ME--SHTRLVKGEDLQLEC 283

  Fly    64 HVRHLGGYRVGWLKADTKAIQAIHENVI--THNPRVTVSHLDQNTWNLHIKAVSEEDRGGYMCQL 126
            ........:|.|:|.   ....:.|.|:  :|...:||            :.|:|||.|.|||:.
Zfish   284 IAEGFPTPKVEWVKI---GFNKLPERVVVESHGKLLTV------------EMVNEEDEGKYMCRA 333

  Fly   127 NTDPMKSQIGFLDVVI--PPDFISEDTSSDVIVPEGSSVRLTCRARGYPEPIVTWRRE------- 182
            . :|....:....|.:  ||:|..|..|.  :|..|:.|.:.|..:|.|:|.|.||..       
Zfish   334 K-NPHGEVVHHFHVTVEEPPEFEIEPQSQ--LVTIGADVLIKCVVKGNPQPTVGWRVNGRPLNEV 395

  Fly   183 -DGNEIVLKDNVGTKTLAPSFRGEVLKLSKISRNEMGSYLCIASNGVPPSVSKRISLSIHFHPVI 246
             ..|..:|||  ||           :.:...:......|.|.|:|.....::....:.::..|:|
Zfish   396 PTSNRKILKD--GT-----------ISIHNANPENSAVYQCEATNKHGTILANANIMIMNIQPLI 447

  Fly   247 QVPNQL-VGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVTSGKYHVQESSQSMYETKMSMIVR 310
            ...|.| ..|..|..|.:.|.|.:||.|...|.|......|...::.|.::.        |:.:.
Zfish   448 LTENNLQYMAVEGKSVVMHCKVFSSPASSITWSKADSANAVEGERFTVHQNG--------SLEIH 504

  Fly   311 KFQKDDVGSYRCIAKNSLGEVDSSIRLYEIPGPNRNKNP------LNGGGKGGGAGGSLD---AD 366
            ...|:|:|.|.|.|:|:.|:|..:..| |:..|.|..:|      |.|...........|   .|
Zfish   505 NVMKEDMGEYSCFAQNTEGKVAIAATL-EVKDPTRIVDPPRDLRVLAGTTIQFSCQPEFDPSFGD 568

  Fly   367 ANDILKQKQQVKVTYQPEDEE--LQYGSVEDFEAEGGEGG-----GLTP---------------- 408
            ..::|.:|..:.:. ..||..  |:.|.:|......|:.|     ..||                
Zfish   569 DFEVLWEKDGIALN-GSEDGRYILEDGVLEIINVSFGDQGFYACVARTPVDQDVAVAQLSVVDVP 632

  Fly   409 -------LSPH------VYYTSGN-------------KPATHKPGN------SGGNQH---LHQQ 438
                   ||.|      :.:|.|:             :.:.|:||:      ..||.|   |...
Zfish   633 DPPEDVILSEHNGRSVKLQWTPGDDHNSSITEFVLEFEESQHEPGSWREMMRVPGNHHSAPLKLY 697

  Fly   439 HHHHHHHNNNNNNQQHSGGPGGG----PTGGDAGSLGGEMGGITRKPPPYYGGNTEVRGPIDNN 498
            .|..:....:..|:...|.|...    .|...|.....|...|....|.....|.|...||::|
Zfish   698 GHVDYRFRVSAINEVGKGRPSQSTERYKTPASAPDKNPENIKIEAHLPHEMDINWEPLSPIEHN 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 20/81 (25%)
Ig 51..131 CDD:299845 19/81 (23%)
I-set 144..240 CDD:254352 24/103 (23%)
IGc2 159..228 CDD:197706 19/76 (25%)
Ig 244..337 CDD:299845 26/93 (28%)
I-set 244..337 CDD:254352 26/93 (28%)
chl1bXP_017212175.2 Ig 61..135 CDD:325142
Ig 138..231 CDD:325142 131/584 (22%)
Ig 279..348 CDD:325142 19/84 (23%)
Ig 366..438 CDD:325142 19/84 (23%)
IG 454..533 CDD:214652 23/87 (26%)
I-set 538..628 CDD:333254 17/90 (19%)
FN3 632..722 CDD:238020 16/89 (18%)
FN3 734..815 CDD:238020 8/28 (29%)
FN3 832..931 CDD:238020
fn3 942..1022 CDD:306538
FN3 1070..1142 CDD:214495
Bravo_FIGEY 1196..1279 CDD:316405
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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