DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10803 and Ro60

DIOPT Version :9

Sequence 1:NP_570064.1 Gene:CG10803 / 31320 FlyBaseID:FBgn0029666 Length:637 Species:Drosophila melanogaster
Sequence 2:NP_038863.1 Gene:Ro60 / 20822 MGIID:106652 Length:538 Species:Mus musculus


Alignment Length:616 Identity:134/616 - (21%)
Similarity:245/616 - (39%) Gaps:131/616 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 MEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKLRRFCFIGSTDEPVYTTPALDLVVENNFA 128
            ||..|...|||    |:.:...|||..:..:..:::||||...|| :...|......|.:||   
Mouse     1 MEGSANQLQPL----SETQVVNSEGGCVWQVTDMNRLRRFLCFGS-EGGTYYIKEQKLGLEN--- 57

  Fly   129 SLKELCSQVSED----ELVECLLSVLGSEPNEEQPPRPDEPLLILAVFFTTCEDEKKRNAVRNRF 189
              .|...::.||    |:::.:.|.     ::|......||||......:.|.|...:.|.....
Mouse    58 --AEALIRLIEDGRGCEVIQEIKSF-----SQEGRTAKQEPLLFALAVCSQCADINTKQAAFKAV 115

  Fly   190 TDLITSESDLLLFVQLVKRVQKLLERKTPFNRTVRKAVLNWYGTK-SLDRLLHFWSIGDGNRWPA 253
            .::....:.|..|:|..|.:::.: :...:.|.:||||.:||..| .:...|........|.| :
Mouse   116 PEVCRIPTHLFTFIQFKKDLKESM-KCGMWGRALRKAVADWYNEKGGMAVALVVTKYKQRNGW-S 178

  Fly   254 HRDLLYRLHFRHANFLPEIIAAL-RLLSSSPKELSQWPDFLTPLTSFRE---TIEGVVKLRLLTD 314
            |:|||...|.:.::   |.:|.: :.::...||:.:         .::|   ::|....|:.|  
Mouse   179 HKDLLRLSHLKPSS---EGLAIVTKYITKGWKEVHE---------EYKEKALSVEAEKLLKYL-- 229

  Fly   315 PEQAISIVKKLSLSWEHVPFHLLHDPRLA--HFLIPHMS----YEQLLQKWPRLSRL-------- 365
              :|:..||:.....|.:  ||:.:.:|.  |.|..|:.    ::.|||:.|..:.|        
Mouse   230 --EAVEKVKRTKDDLEVI--HLIEEHQLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTA 290

  Fly   366 -------NSRVRPFAEQLLDKKKLKASNVPPVRLL--LEDMR----LR-KPKKVVNQLVLPSSLK 416
                   ||.|....|:|.::|.||.:.:.|..:|  ||..|    || |.|.:.::.:|.:   
Mouse   291 NSVLEPGNSEVSLICEKLSNEKLLKKARIHPFHVLIALETYRAGHGLRGKLKWIPDKDILQA--- 352

  Fly   417 NKNTFKFQCATTSFQKASFLHSVYEISFGLNKALGRR----LHITLNLEQAYLGKYLSGPCRSLK 477
                               |.:.:..:|...:..|:|    :.::.::.|..||..|:..     
Mouse   353 -------------------LDAAFYTTFKTVEPTGKRFLLAVDVSASMNQRALGSVLNAS----- 393

  Fly   478 YLDALVALGFGYFRSDRKVT-VEFWHDRSGKLKALPWTNEMSVSEAKTCCENQKVGKVRQSLNEI 541
              ....|:.....|::::.: |.|..|    :...|.|.:|::.:..|.......|....||   
Mouse   394 --TVAAAMCMVVTRTEKESSVVAFACD----MVPFPVTTDMTLQQVLTAMNKVPAGNTDCSL--- 449

  Fly   542 LFRALLDMQNT---FDVFLVLVPG---AARGNPENNSKCLAALMDKYREKRNSNAKFIMVSLRQR 600
               .::..|.|   .|||:|....   |.:.:|       |..:.:||:|.:..||.|:..:  .
Mouse   450 ---PMIWAQKTDTAADVFVVFTDNETFAGQVHP-------AVALREYRKKMDIPAKLIVCGM--T 502

  Fly   601 QRSMIYSSGRNENLLELCSLDKHTPRLINAF 631
            ......:...:..:|::|..|.....:|..|
Mouse   503 SNGFTIADPDDRGMLDMCGFDTAALDVIRNF 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10803NP_570064.1 TROVE <197..394 CDD:283406 53/224 (24%)
Ro60NP_038863.1 TROVE 16..369 CDD:368584 89/405 (22%)
RNA-binding. /evidence=ECO:0000250|UniProtKB:P42700 120..284 43/183 (23%)
VWFA-like domain. /evidence=ECO:0000250|UniProtKB:P42700 361..538 39/199 (20%)
vWFA 372..489 CDD:238119 27/140 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849764
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4465
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 61 1.000 Inparanoid score I5398
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59608
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007329
OrthoInspector 1 1.000 - - oto94962
orthoMCL 1 0.900 - - OOG6_107029
Panther 1 1.100 - - LDO PTHR14202
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2766
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.790

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