DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10804 and slc6a4b

DIOPT Version :9

Sequence 1:NP_001138150.1 Gene:CG10804 / 31317 FlyBaseID:FBgn0029663 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:601 Identity:222/601 - (36%)
Similarity:319/601 - (53%) Gaps:86/601 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 EERESWDSKIMFLLATIGYAVGLGNVWRFPYLAQKNGGGAFLVPYFIMLCIQGIPIFYLELAIGQ 180
            |.|:.|..|:.|||:.||:||.|||||||||:..:|||||||:||.:|....|:|:||:|||:||
Zfish    36 ESRDKWSKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYVLMAVFGGVPLFYMELALGQ 100

  Fly   181 RLRKGAIGVWSQVSPYLGGIGISSAVVSYIVALYYNTIIAWCLIYLLHSFESPLPWADCP----- 240
            ..|.|||.:|..:.|...|||.:..:::..|:.||||||||.|.|...||.|.|||..|.     
Zfish   101 FHRTGAISIWKHICPIFKGIGFAICIIALYVSFYYNTIIAWALFYFYSSFSSTLPWTSCDNDWNT 165

  Fly   241 ---TRLY--KNFTYDHEPECVASSPTQFYWYRTTLQCSESVDMPENFNY---HMAIALIVSWFLV 297
               |..:  .|.|:.:    .:.||.:.::.|..|...||..: .|..|   .:.:.|.:.:.:|
Zfish   166 ENCTNYFGKDNVTWTN----YSRSPAEEFYTRNVLAVHESSGL-GNVGYIRWQLMLCLFLIFTIV 225

  Fly   298 YICMVQGITSSGKIVYMTAIFPYVVLIIFFFRGITLKGAADGVAHLFTPRWETLLDPVVWLEAGT 362
            |..:.:|:.:|||:|::||..|||||:|...||.||.||..||.....|:||.|.:..||::|..
Zfish   226 YFSLWKGVKTSGKVVWVTATLPYVVLLILMIRGATLPGAWKGVVFYLNPKWEKLKETSVWVDAAA 290

  Fly   363 QIFFSLGLAFGGLIAFSSYNPANNNCYRDAILVSLTNCGTSMFAGVVVFSVIGFKATATFDRCTE 427
            |||||||..||.|:|.|||||..||||||||:.||.||.||..:|.|:|:|:|:.|        |
Zfish   291 QIFFSLGPGFGVLLALSSYNPFTNNCYRDAIVTSLVNCLTSFVSGFVIFTVLGYMA--------E 347

  Fly   428 ERNGLVAQNKTHNLPVCDLQTELANSASGTGLAFIIFTEAINQFPGAQLWAVLFFLMLFTLGIDS 492
            :||               :..|......|..|.||.:.|||....|:..:|::||:|:.|||:||
Zfish   348 QRN---------------VNVEDVARDKGPSLLFITYPEAIANMVGSTFFAIIFFVMMITLGLDS 397

  Fly   493 QFGTLEGVVTSLVDMKLFPNL---PKEYIVGALCFSCCTISMCFANGAGSYIFQLMDSFAGNFPL 554
            .||.||.::|:::|.  :|::   .:|..|..|...|...|:......|:|:.:|::.|.....:
Zfish   398 TFGGLEAIITAVMDE--YPDVLSHRRELFVLGLVVVCFLGSLSTLTKGGAYVVKLLEEFGVGSSI 460

  Fly   555 LIIALFECLSISYIYGVRRFSDDIEMMTGSRPNFYWMFCWKYLSPCAMVTILLASFY--QLLTEG 617
            :.|...|..::|:.||:.|||:||:.|.|..|..:|..||..:||..:..|:::|..  |.||  
Zfish   461 IAIVFLEATAVSWFYGINRFSNDIKSMLGYTPGLFWKVCWVAISPAFLAYIIISSLLNPQTLT-- 523

  Fly   618 SSYPAWIGSKGATEGMEWPHWCIVVAFFLILSSILWIPIVAVLRLCGIKVVEDSDPAWF------ 676
                        ....|:|.|.|.|.:.:..||.:||||..|.:|           .|.      
Zfish   524 ------------LFDYEFPDWSITVGYIIGASSFIWIPIYMVYKL-----------VWTPGSLKQ 565

  Fly   677 -------PEAELREVH 685
                   ||..|.::|
Zfish   566 RLAVCLRPERTLPDIH 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10804NP_001138150.1 SLC6sbd-B0AT-like 120..661 CDD:271364 214/558 (38%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 217/590 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.