DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10804 and snf-9

DIOPT Version :9

Sequence 1:NP_001138150.1 Gene:CG10804 / 31317 FlyBaseID:FBgn0029663 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_503077.2 Gene:snf-9 / 178512 WormBaseID:WBGene00004908 Length:713 Species:Caenorhabditis elegans


Alignment Length:625 Identity:192/625 - (30%)
Similarity:288/625 - (46%) Gaps:120/625 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 SSELEQDPPPFGSEASTSKAKAELVA--IATASADQQDIVEGEKEGEERESWDSKIMFLLATIGY 134
            |||....|....|.:.:|.|:.:.:|  |...|...::|.|.:.: ..|.:|.::|.|||:|:|.
 Worm     4 SSERMTSPTQRRSPSDSSAAEDQRIATTIVRDSGSSKEIEESQAD-PCRGAWGNQIEFLLSTLGM 67

  Fly   135 AVGLGNVWRFPYLAQKNGGGAFLVPYFIMLCIQGIPIFYLELAIGQRLRKGAIGVWSQVSPYLGG 199
            ||||||:||||..|..|||.||||||.....:.|:|..|||..:||..|..|..::.:.:|.|.|
 Worm    68 AVGLGNIWRFPTRAYNNGGSAFLVPYVACALLFGLPAVYLEFLLGQYHRTTAPIIFRRFAPILQG 132

  Fly   200 IGISSAVVSYIVALYYNTIIAWCLIYLL-----HSFESPLPWADCPTRLYKNFTYDHEPECVAS- 258
            :|..:..||.:||:||..||.|..:|:.     |:.:    |..|..      ::::...||.| 
 Worm   133 VGWMAVAVSSLVAIYYIIIIGWSTVYMASIVMGHTSK----WNRCGN------SWNNAESCVDSG 187

  Fly   259 ---------------SPT----------QFYWYRTTLQCSESVDMPEN----------------- 281
                           ||.          :||.|..| .|.:.||:..|                 
 Worm   188 LQPLCASFNATGNETSPVWANLSSEGRGKFYIYLNT-SCYDKVDLEFNKTKMIAATEQYFFDYVV 251

  Fly   282 -----------FNYHMAIALIVSWFLVYICMVQGITSSGKIVYMTAIFPYVVLIIFFFRGITLKG 335
                       .|:.....:...|.:|.:.:.:|:...||..|:....||.::|:.|||||||.|
 Worm   252 KPTDGFLEFSSINFKSFFGMNACWLIVVLILWKGVGYMGKASYVIVTLPYFIIILLFFRGITLDG 316

  Fly   336 AADGV-AHLFTPRWETLLDPVVWLEAGTQIFFSLGLAFGGLIAFSSYNPANNNCYRDAILVSLTN 399
            |.||: .:|..|.|..:..|..|.||..|:.||||:.:||||..:|::..||||:|||::|.:.:
 Worm   317 AEDGIYYYLGNPDWSKVFMPATWGEALKQLCFSLGIGYGGLIGMASFSKPNNNCFRDALIVIIGD 381

  Fly   400 CGTSMFAGVVVFSVIGFKATATFDRCTEERNGLVAQNKTHNLPVCDLQTELANSASGTGLAFIIF 464
            ...|:..|..|||.:||.|         ::.|            |.: .|:.|  .|..|||:.|
 Worm   382 TMMSLVGGAAVFSTLGFLA---------KKKG------------CSV-AEVVN--DGFSLAFVAF 422

  Fly   465 TEAINQFPGAQLWAVLFFLMLFTLGIDSQFGTLEGVVTSLVDMKLFPNLPK-EYIVGAL-CFSCC 527
            .||:.:.|..:||:.|||||||.|||.::...:....:|:.|.  |.||.| :::|..| |....
 Worm   423 PEALGRMPLPELWSFLFFLMLFFLGISTEVAYVNVFCSSICDQ--FVNLRKRKWLVAVLWCLVLY 485

  Fly   528 TISMCFANGAGSYIFQLMDSFAGNFPLLIIALFECLSISYIYGVRRFSDDIEMMTGSRPNF---- 588
            .:.:......|.|.|.:.|.:|...........|.|.::|:||.|....|::.|.|...|.    
 Worm   486 VLGVVMVTDGGFYWFIMFDEYAAGVSSCCAVTAEVLIVAYVYGRRNQLADMKEMFGESKNKCTSW 550

  Fly   589 ------YWMFCWKYLSP-CAMVTILLASFYQLLTEGSSYP 621
                  |:.|.|.:::| ...:.|:|||..|       ||
 Worm   551 IGQHSPYFGFNWMFVTPVLGSILIVLASIRQ-------YP 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10804NP_001138150.1 SLC6sbd-B0AT-like 120..661 CDD:271364 179/575 (31%)
snf-9NP_503077.2 SLC6sbd 52..577 CDD:271359 173/561 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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