DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10804 and snf-2

DIOPT Version :9

Sequence 1:NP_001138150.1 Gene:CG10804 / 31317 FlyBaseID:FBgn0029663 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_492396.2 Gene:snf-2 / 172701 WormBaseID:WBGene00004901 Length:746 Species:Caenorhabditis elegans


Alignment Length:684 Identity:179/684 - (26%)
Similarity:295/684 - (43%) Gaps:146/684 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 EGEERESWDSKIMFLLATIGYAVGLGNVWRFPYLAQKNGGGAFLVPYFIMLCIQGIPIFYLELAI 178
            |..:|:::.. |..||:::|.|:||||:||||.:|.:|||.:||:.|.|...:..:|..::|.|:
 Worm   105 ENTDRQAFRG-IESLLSSLGQAIGLGNIWRFPTVAYQNGGTSFLIVYIICAFVFAVPAIHMEFAL 168

  Fly   179 GQRLRKGAIGVWSQVSPYLGGIGISSAVVSYIVALYYNTIIAWCLIYLLHSF------ESPLPW- 236
            ||...|....|:.::.|.|.|:|..:.:|..::.:||..:|:|.::|:::.|      ....|| 
 Worm   169 GQYAAKSPPAVFRRIMPALEGVGWMTCIVGAVIGVYYMILISWIVLYIINIFYVNNMGRCDNPWN 233

  Fly   237 ----------ADCPTRLYKNFTYDHEPECVASSPTQFYWYRTTL----------------QCSES 275
                      :.|...||.|.|.:      |||     :..||:                :|.::
 Worm   234 QNNCYDGSEQSRCNKGLYSNMTAN------ASS-----FLNTTMAPLMSSGSKRILYINGKCQDA 287

  Fly   276 VDM-----PENF------------------NYHMAIALIVSWFLVYICMVQGITSSGKIVYMTAI 317
            .:|     .|.|                  |..:..|:.:.|.:..:.:::|:.:.||:.|:|.|
 Worm   288 TNMSVEVGTEQFFSKSVIRPSAGFTDFNSINLPILGAVALCWVIAAVVLIRGMKAIGKLSYVTVI 352

  Fly   318 FPYVVLIIFFFRGITLKGAADGVAHLF-TPRWETLLDPVVWLEAGTQIFFSLGLAFGGLIAFSSY 381
            .||.:::.....|::|.||.||:.||| ...:..|.....|..|..||.|||.:..|||:..:||
 Worm   353 LPYFIIVSLLICGVSLPGAKDGLYHLFGQTDFNYLYKRETWTAALQQICFSLSIGQGGLMNIASY 417

  Fly   382 NPANNNCYRDAILVSLTNCGTSMFAGVVVFSVIGFKATATFDRCTEERNGLVAQNKTHNLPVCDL 446
            |....|.|||..::...:...|:..|:.|||.:||.|   ::|      |:   |.|      |:
 Worm   418 NKKTYNWYRDVYIIVFLDTLMSILGGITVFSTLGFLA---YER------GI---NST------DI 464

  Fly   447 QTELANSASGTGLAFIIFTEAINQFPGAQLWAVLFFLMLFTLGIDSQFGTLEGVVTSLVDMKLFP 511
            .........|..||||::||||.:.|...||..|||:|||.|||.::...:|.|.:.|.|.  |.
 Worm   465 DAFNHIVKEGHALAFIVYTEAIAEMPVPYLWYALFFIMLFLLGISTEVVIVEIVCSCLADR--FR 527

  Fly   512 NLPKEYIVGALCFSCC--TISMCFANGAGSYIFQLMDSFAGNFPLLIIALFECLSISYIYGVRRF 574
            .|.:...:..|..|..  .:.:.....||.|.|.:.|.::............|:::.:.||...|
 Worm   528 YLRERRWLTVLSVSAVFFLLGLVMTTDAGFYWFDMFDEYSTGISATFGTAIMCMTVFWCYGTNHF 592

  Fly   575 SDDIEMMTGSRPN----------FYWMFCWKYLSP-CAMVTI---LLASFYQLLTEGSSYPAWIG 625
            .:||.:|.|...:          ::|...||:::| |:::.:   :....|....:|..||....
 Worm   593 REDIAVMWGEPESWLATCLGPAAYFWTLIWKFVTPVCSLLMMGLWIWEKKYPHKGDGKIYPPVFD 657

  Fly   626 SKGATEGMEWPHWCIVVAFFLILSSILWIPIVAVL--RLCGIKV---------------VEDSDP 673
            :.|         |.|.|..||::..   ..|.||:  |...|.:               :.:..|
 Worm   658 ALG---------WFIAVVPFLVIPG---FAIAAVINTRRMNIPIRGAFMLQKQHPSYDRISEQWP 710

  Fly   674 AW-------FPEAE-----LREVHGIVPHEPTEL 695
            .|       .||.|     |..:.|:...|...|
 Worm   711 EWKKAIGDKLPEQEPGDDDLNMIDGLETKESDSL 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10804NP_001138150.1 SLC6sbd-B0AT-like 120..661 CDD:271364 166/615 (27%)
snf-2NP_492396.2 SLC6sbd 113..638 CDD:271359 153/556 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.