DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12206 and GRXS17

DIOPT Version :9

Sequence 1:NP_570060.1 Gene:CG12206 / 31316 FlyBaseID:FBgn0029662 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_192404.1 Gene:GRXS17 / 825835 AraportID:AT4G04950 Length:488 Species:Arabidopsis thaliana


Alignment Length:527 Identity:115/527 - (21%)
Similarity:200/527 - (37%) Gaps:112/527 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 SNTEM-SLKSQAAGMLLAFGDTAATAK-------DNLETSYDTA----AKSTAAPETNKIY---- 105
            |..|: :|:...|.::|.|..:...|.       .:|.|.:..|    .::...||.::.|    
plant    10 SKAELDNLRQSGAPVVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVAA 74

  Fly   106 --------------------PQLLLRIGGEIAGATASAEAAASAATAAAATATSPTIISCNGEIA 150
                                |..|....|::||::.|||.||.|:...||   .|||:    |..
plant    75 VPYFVFFKDGKTVDTLEGADPSSLANKVGKVAGSSTSAEPAAPASLGLAA---GPTIL----ETV 132

  Fly   151 ASQAAATAADTAATLQHNNTVKIQIESQGQQRTLGKQISVVKLNEGVEEMQQHMC----YLVDTS 211
            ...|.|:..|.|..:...:.:|.::|.      |.....|:...:|:.|  :..|    .:||..
plant   133 KENAKASLQDRAQPVSTADALKSRLEK------LTNSHPVMLFMKGIPE--EPRCGFSRKVVDIL 189

  Fly   212 GQYSPCETLDSGTGSDLENHPQQQQQPQQVRSPQL-ELHLQTTRLMVNEEADHKHSPLETPSPVP 275
            .:.:    :|.|:...|.::..::...:....|.. :|:.....|...:.|...|...|......
plant   190 KEVN----VDFGSFDILSDNEVREGLKKFSNWPTFPQLYCNGELLGGADIAIAMHESGELKDAFK 250

  Fly   276 KRAYSLTDDSEECDE--------SSNSSLSCDSLHS--GGLL---PTTLLRDIRFRERA---SGP 324
            ....:.....|..||        |.|:.|| ::|.:  .||:   |..|....|..|..   ||.
plant   251 DLGITTVGSKESQDEAGKGGGVSSGNTGLS-ETLRARLEGLVNSKPVMLFMKGRPEEPKCGFSGK 314

  Fly   325 LVTKINGRPLQFET-DGYYTFHVREHENFRSFGSNSSTEYEAQHFTDE-QPGEDFVGFRDIRTAG 387
            :|..:|...::|.: |......||  :..:.:.:.||  |...:...| ..|.|.|  .:::.:|
plant   315 VVEILNQEKIEFGSFDILLDDEVR--QGLKVYSNWSS--YPQLYVKGELMGGSDIV--LEMQKSG 373

  Fly   388 KLAGNSTIKSAKGTVRGVKNRVRNGVATFLQLQQPNVKNYMEKDVGKVVLYTTSMGIIRDTYAKC 452
            :|....|.|...|. :.:::|::      ..:....|..:|:....:               .||
plant   374 ELKKVLTEKGITGE-QSLEDRLK------ALINSSEVMLFMKGSPDE---------------PKC 416

  Fly   453 ---ANVKKILRTLLIKFEERDIFMSVEYQQEMRERMQDETIRVPQLFVEGQLIGDANIVERLNES 514
               :.|.|.||...:.|...||....|.:|.::......|.  |||:.:|:|||..:|:..|:||
plant   417 GFSSKVVKALRGENVSFGSFDILTDEEVRQGIKNFSNWPTF--PQLYYKGELIGGCDIIMELSES 479

  Fly   515 GELRQLL 521
            |:|:..|
plant   480 GDLKATL 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12206NP_570060.1 GRX_GRX_like 434..579 CDD:239329 26/91 (29%)
GRXS17NP_192404.1 PTZ00062 7..251 CDD:240250 52/259 (20%)
TRX_PICOT 10..102 CDD:239282 15/91 (16%)
GRX_PICOT_like 157..246 CDD:239326 17/100 (17%)
GRX_PICOT_like 287..376 CDD:239326 22/94 (23%)
GRX_PICOT_like 394..483 CDD:239326 26/111 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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