DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dnc and Pde2a

DIOPT Version :9

Sequence 1:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster
Sequence 2:NP_001137319.1 Gene:Pde2a / 81743 RGDID:620965 Length:935 Species:Rattus norvegicus


Alignment Length:1108 Identity:226/1108 - (20%)
Similarity:394/1108 - (35%) Gaps:318/1108 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 CRGGGSAAPATSPPQTPAQ----TPDELKVIPEDCNLEKSAEQKRDLLERNNKEDDLLNRTVSGS 160
            ||  ....||..|.:...|    .|||..  |:.|              .::.:|.||:   .|:
  Rat    11 CR--SQQYPAARPAEPRGQQVFLKPDEPP--PQPC--------------ADSLQDALLS---LGA 54

  Fly   161 ELDLYGGAGGGTKKHSLA------DTIDTSVTTPISLKTLINDVDEELDQQ-------------- 205
            .:|:.|.....  |.:|:      :|:.|.:....| :.:..|...||.|:              
  Rat    55 VIDIAGLRQAA--KDALSAVLPKVETVYTYLVDGES-RLVCEDPPHELPQEGKIREAVISRKRLS 116

  Fly   206 ---LSAADIAAASLASGLVARRAEPETLSDASVSPTAVVQQQQQQQQQLQQPLLQSQPHFVPSSG 267
               |..:|:....||. |||..| |:|                   |.|..|||..:      :|
  Rat   117 CDGLGPSDLLGKPLAR-LVAPLA-PDT-------------------QVLVIPLLDKE------TG 154

  Fly   268 NILSQVTLYSGS-NPSTNPCQSAVQNQG----------QNSNPNPNQNPNTNPNQNQ-------- 313
            .:.:.:.::.|. :.|.......|:...          |...|...||.:.:|:::|        
  Rat   155 TVAAVILVHCGQLSDSEEQSLQVVEKHALVALQRVQALQQRRPEAVQNTSADPSEDQKDEKGYTA 219

  Fly   314 ------QRC-------SCQPQTSPLPHIKEE------------EESDQANFK--HQTSLKEHQPL 351
                  |.|       :...|...|.::::|            |::.|.:.|  .:..|.|....
  Rat   220 HDRKILQLCGELYDLDATSLQLKVLRYLQQETQATHCCLLLVSEDNLQLSCKVIGEKVLGEEVSF 284

  Fly   352 PPPITIATGYCGSC----ESVHHSSATSSSAGTVPPGGQQTQEYIAGTSSTPSPRIKLKFRKPHK 412
            |    :..|..|..    :.:.....||...       ||.|..:                    
  Rat   285 P----LTMGRLGQVVEDKQCIQLKDLTSDDV-------QQLQNML-------------------- 318

  Fly   413 SCWSRIVLAPIGSAGGSSSATTVIGSNSNETLA---SSSTTGGTATTTQNSSSVSVAAHHRLTSS 474
            .|..|.:|           ...||...:::.:|   :.:..||...|.::..::....|:     
  Rat   319 GCELRAML-----------CVPVISRATDQVVALACAFNKLGGDFFTDEDERAIQHCFHY----- 367

  Fly   475 SASALATSHPSNSQLLPTSKMQAEQGSIGDLQKYHSRYLKNRRHTLANVRFDVENGQGARSPLEG 539
                      :.:.|..|...|.||            .||.....|..|      .:...:.|: 
  Rat   368 ----------TGTVLTSTLAFQKEQ------------KLKCECQALLQV------AKNLFTHLD- 403

  Fly   540 GSPSAGLVLQNLPQRRESFLYRSDSDFEM-SPKSMSRNSSIASERFKEQEASILVDRSHGEDLIV 603
               ...::||.:....     |:.|:.|: |...:.:|..:|    |..:..::.|.|:.   |.
  Rat   404 ---DVSVLLQEIITEA-----RNLSNAEICSVFLLDQNELVA----KVFDGGVVDDESYE---IR 453

  Fly   604 TPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASRSGNPPGAPLSQGEEAYTRLATDTIE 668
            .|..|.:|...:....:|::.:..|.....|....|:..|:.|....|:....:....:| :.:.
  Rat   454 IPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVA-ELVN 517

  Fly   669 ELD--WCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSGNQISEYICSTFLDKQQEFD 731
            :::  |.....|.:.|..|:....|:... :|.|:::.....|...|::..|             
  Rat   518 KINGPWFSKFDEDLATAFSIYCGISIAHS-LLYKKVNEAQYRSHLANEMMMY------------- 568

  Fly   732 LPSLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGERLPTFGVE 796
              .::|.|:                :|.:.......|::.|.      |:..:||         .
  Rat   569 --HMKVSDD----------------EYTKLLHDGIQPVAAID------SNFANFT---------Y 600

  Fly   797 TPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTSLMIPPKTFLNFMSTLE 861
            |||.      |.|.||                 :....::.|....:.:..|...|...|...::
  Rat   601 TPRS------LPEDDT-----------------SMAILSMLQDMNFINNYKIDCPTLARFCLMVK 642

  Fly   862 DHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGALFAACI-HDVDHPGLTNQFLVN 925
            ..| :|.|:||.:||..|:....:|.....|......:|: .|||.:|: ||:||.|..|.|.|.
  Rat   643 KGY-RDPPYHNWMHAFSVSHFCYLLYKNLELSNYLEDIEI-FALFISCMCHDLDHRGTNNSFQVA 705

  Fly   926 SSSELALMYNDE-SVLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMS 989
            |.|.||.:|:.| ||:|.||.|.|..:|...||:||.:..:|..|.:..::.||:|:||::.|:.
  Rat   706 SKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLR 770

  Fly   990 LLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHC-----ADLSNPTKPLPLYKRWVALLME 1049
            :..||:.|.|.            .|....:....|:.|     .|||:.||.....::...|:.:
  Rat   771 IFKDLQKMAEV------------GYDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYK 823

  Fly  1050 EFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENR 1114
            |||.|||.|:..|.....|.||..|.|.:.|:.|:::|..|:::...|| .|.|.::.:.:..||
  Rat   824 EFFSQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDL-FPKAAELYERVASNR 887

  Fly  1115 DYY 1117
            :::
  Rat   888 EHW 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dncNP_726846.1 PDEase_I 870..1111 CDD:278654 80/247 (32%)
Pde2aNP_001137319.1 GAF 235..382 CDD:214500 29/203 (14%)
GAF 404..553 CDD:214500 30/162 (19%)
PDEase_I 650..883 CDD:278654 80/246 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3689
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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