DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dnc and pde4b

DIOPT Version :9

Sequence 1:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster
Sequence 2:XP_031756141.1 Gene:pde4b / 780324 XenbaseID:XB-GENE-963512 Length:733 Species:Xenopus tropicalis


Alignment Length:769 Identity:410/769 - (53%)
Similarity:517/769 - (67%) Gaps:92/769 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 QNSSSVSVAAHHRLTSSSASALATSHPSNSQLLPTSKMQAEQGSIGDLQ--KYHSRYLK------ 514
            ::.|.::|.|...:.:.:...|:.|:.|....:.....:.::...|.||  ..|.|.::      
 Frog     3 KSRSVMTVTAEDNVQNFTEVCLSKSYSSYGYNMGIDLWKGKRFCSGTLQLPPLHHRQMRRAKTPD 67

  Fly   515 --NRRHTLANV-------------RFDVENG-QGARSPLE-GGSPSAGLVLQ----NLPQRRESF 558
              :|..||..:             .|||||| ...||||: ..||.:||||.    :..||||||
 Frog    68 YIHRPTTLPLLLPPKIAVTPVEKDSFDVENGPTPGRSPLDHQASPGSGLVLHTNFTSHNQRRESF 132

  Fly   559 LYRSDSDFEMSPKSMSRNSSIASERFKEQEASILVDRSHGEDLIVTPFAQILASLRSVRNNLLSL 623
            |||||||:::|||:||||||.|||:             ||:|||||||||:||||||||||...|
 Frog   133 LYRSDSDYDLSPKTMSRNSSAASEQ-------------HGDDLIVTPFAQVLASLRSVRNNFTVL 184

  Fly   624 TNVPASNKSRRPNQSSSASRSGNPPGAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSD 688
            |||..:...|.|       .:..|..:.::..|::|.::|.||:|||||||||||||||:||||:
 Frog   185 TNVHGAPNKRSP-------MTTQPQISRVNLQEDSYQKIAMDTLEELDWCLDQLETIQTYRSVSE 242

  Fly   689 MASLKFKRMLNKELSHFSESSRSGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAAGQQ 753
            |||.|||||||:||:|.||.||||||:||||.|||||||.:.::||...:|              
 Frog   243 MASNKFKRMLNRELTHLSEMSRSGNQVSEYISSTFLDKQNDVEIPSPTQKD-------------- 293

  Fly   754 SAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGERLPTFGVETPRENELGTLLGELDTWGIQIF 818
                  |.:..:...|:||||||: |.|::|.....:..|||:|..|:.|...|.:|:.||:.||
 Frog   294 ------REKKKKQQLMTQISGVKK-LMHSSSLNNTSMSRFGVKTEYEDMLSKELEDLNKWGLNIF 351

  Fly   819 SIGEFSVNRPLTCVAYTIFQSRELLTSLMIPPKTFLNFMSTLEDHYVKDNPFHNSLHAADVTQST 883
            .:..:|.||||||:.|.|||.|:||.:..||..|.:.:..||||||..|..:|||||||||||||
 Frog   352 KVASYSCNRPLTCIMYAIFQERDLLKTFKIPADTLITYTMTLEDHYHSDVAYHNSLHAADVTQST 416

  Fly   884 NVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVA 948
            :|||:||||:.|||.||:..|:|||.||||||||::||||:|::||||||||||||||||||||.
 Frog   417 HVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVG 481

  Fly   949 FKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDN 1013
            |||||.:.||||.|:.|||||:|||||||:||:||||||||||||||||||||||..||||||||
 Frog   482 FKLLQEEHCDIFQNLTKKQRQSLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDN 546

  Fly  1014 YTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIEK 1078
            ||||||||.|:|||||||||||.|.||::|...:|||||.|||||||.||:||||||:|.|::||
 Frog   547 YTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEK 611

  Fly  1079 SQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSMIPPSPPPSGVDENPQE-----DR 1138
            |||||||||||||||||||||.|||||||||||:||::||||||.||.|. :||:.::     ::
 Frog   612 SQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSMIPQSPSPL-LDEHDKDCQGLSEK 675

  Fly  1139 IRFQVTLEESDQE----------------NLAELEEGDESGGESTTTGTTGTTA 1176
            ..|::||||.|.:                .|..:::|.|...::.|...|..|:
 Frog   676 FHFELTLEEEDSDGHDKDGDCLSFYSSTKTLHIVDQGMEDSPDADTEFLTDDTS 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dncNP_726846.1 PDEase_I 870..1111 CDD:278654 194/240 (81%)
pde4bXP_031756141.1 PDE4_UCR 164..279 CDD:407935 75/121 (62%)
PDEase_I 403..644 CDD:395177 194/240 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 414 1.000 Domainoid score I665
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 763 1.000 Inparanoid score I546
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 1 1.000 - - FOG0000302
OrthoInspector 1 1.000 - - otm47870
Panther 1 1.100 - - LDO PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X171
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

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