DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dnc and pde4a

DIOPT Version :9

Sequence 1:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster
Sequence 2:XP_009298019.1 Gene:pde4a / 572061 ZFINID:ZDB-GENE-131125-7 Length:777 Species:Danio rerio


Alignment Length:734 Identity:403/734 - (54%)
Similarity:491/734 - (66%) Gaps:91/734 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   468 HHRLTSSSASALATSHPSNSQLLPTSKMQAEQGSIGDLQKYHSRYLKNRRHTLANVRFDVENGQG 532
            |||....|.:...:..|.    |..|:|...       ..:|.....:..:...|.|:|.|||..
Zfish    54 HHRQIERSNAMDTSDRPG----LKKSRMSWP-------SSFHGTTSASMSNCAGNKRYDGENGPS 107

  Fly   533 -ARSPLEGGSPSAGLVLQ-NLP--QRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEASILV 593
             .|||:: ...|.||||. :.|  |||||||||||||::||||:|||||||.||           
Zfish   108 PGRSPMD-SQASPGLVLHPSFPQSQRRESFLYRSDSDYDMSPKTMSRNSSINSE----------- 160

  Fly   594 DRSHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASRSGNPPGAPLSQGEEA 658
              .|.||||||||||:|||||:||:|...|.||..      |..:..:..:..|...|.:..:|.
Zfish   161 --GHAEDLIVTPFAQVLASLRTVRSNFTILANVTT------PTTTMRSPVTSQPTVPPATLSDET 217

  Fly   659 YTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSGNQISEYICSTF 723
            |.:||.:|:||||||||||||||||||||:|||.|||||||:||||.||.||||||:||||.:||
Zfish   218 YQQLARETLEELDWCLDQLETIQTHRSVSEMASNKFKRMLNRELSHLSEMSRSGNQVSEYISTTF 282

  Fly   724 LDKQQEFDLPSLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGE 788
            ||||.|.::||..:.:                         |..|||.|||||: |:|::|.|..
Zfish   283 LDKQNEVEIPSPTLRE-------------------------REKPMSHISGVKK-LTHSSSLTSA 321

  Fly   789 RLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTSLMIPPKTF 853
            .||.|||:|.:|:.|...|.:|:.||:.||.:.|||.||||:|:.:.|||.|:||.:..||..||
Zfish   322 ALPRFGVKTEQEDALARELNDLNKWGLNIFHVAEFSNNRPLSCIMFAIFQERDLLKTFRIPVDTF 386

  Fly   854 LNFMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGL 918
            :.::.||||||..:..:|||||||||||||:|||:||||:.||:.||:..|||||.||||||||:
Zfish   387 ITYVMTLEDHYHANVAYHNSLHAADVTQSTHVLLSTPALDAVFSDLEILAALFAAAIHDVDHPGV 451

  Fly   919 TNQFLVNSSSELALMYNDESVLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTD 983
            :||||:|::||||||||||||||||||||.||||..:.||||.|:.|:|||:|||:|||:||:||
Zfish   452 SNQFLINTNSELALMYNDESVLENHHLAVGFKLLHEENCDIFQNLTKRQRQSLRKLVIDMVLATD 516

  Fly   984 MSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLM 1048
            ||||||||||||||||||||..||||:||:|.||||||.|:|||||||||||||.:|::|...:|
Zfish   517 MSKHMSLLADLKTMVETKKVTSSGVLMLDHYNDRIQVLRNMVHCADLSNPTKPLAVYRQWTERIM 581

  Fly  1049 EEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEEN 1113
            ||||.|||||||.||:||||||:|.|::|||||||||||||||||||.||||||||:||||||:|
Zfish   582 EEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWGDLVHPDAQEILDTLEDN 646

  Fly  1114 RDYYQSMIP--PSPPPSGVDENPQEDRIRFQVTL-----------------------EESDQENL 1153
            ||:|||.||  |||||...|...:..|.:||..|                       |:.|.|..
Zfish   647 RDWYQSTIPQSPSPPPDRPDNELESCRNKFQFELTLEGETVQDGPPSHNHIVIHDQDEKKDDEEA 711

  Fly  1154 AELEEGD-----ESGGEST 1167
            .|.||.:     |.|.|.|
Zfish   712 EEAEEDEAEEKMEDGEEVT 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dncNP_726846.1 PDEase_I 870..1111 CDD:278654 187/240 (78%)
pde4aXP_009298019.1 PDEase_I 403..644 CDD:278654 187/240 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 411 1.000 Domainoid score I651
eggNOG 1 0.900 - - E1_KOG3689
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 757 1.000 Inparanoid score I535
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 1 1.000 - - FOG0000302
OrthoInspector 1 1.000 - - otm25732
orthoMCL 1 0.900 - - OOG6_100782
Panther 1 1.100 - - O PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X171
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.830

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