DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dnc and Pde1c

DIOPT Version :9

Sequence 1:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster
Sequence 2:NP_001137817.1 Gene:Pde1c / 34594 FlyBaseID:FBgn0264815 Length:1173 Species:Drosophila melanogaster


Alignment Length:1241 Identity:286/1241 - (23%)
Similarity:428/1241 - (34%) Gaps:424/1241 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 ATGGVGGGGG-------SGSGGGGCGSGSGSGSGKRKSKARTKCFGGTVFRCCLPCRGGGSAAPA 109
            |:||.|..||       |.|.|||..||:.|||....|...|               |.|||:..
  Fly   168 ASGGPGSSGGTSGAATSSSSSGGGAASGAASGSVGPASGTAT---------------GTGSASGG 217

  Fly   110 TSPPQTPAQTPDELKVIPEDCNLEKSAEQKRDLLERNNKEDDLLNRTVSGSELDLYGGAGGGTKK 174
            .....||||                                :..:.||  |||     :|.|:..
  Fly   218 AGGVSTPAQ--------------------------------EAASPTV--SEL-----SGSGSNA 243

  Fly   175 HSLADTIDTSVTTPISLKTLINDVDE----ELDQQL-SAADIAAASLASGL----------VARR 224
                 ||:..|....|| |:|...:.    :.|.|| |.:..|.:|.|.|:          :|.|
  Fly   244 -----TINGQVARHGSL-TIIRRTNSRNFTQFDGQLASPSSTACSSTAPGIGFAQTPLSEPLAER 302

  Fly   225 AEPETLSDASVSPTAVVQQQQQQQQQLQQPLLQSQPHFVPSSGNI--------------LSQVTL 275
            ........::.|.:|...:...|......|...:.....|||.|.              |||..:
  Fly   303 LSFRASGGSNGSASAGDSRSSNQGPSNSGPAASAAVKMQPSSPNATNYLADNIQISSANLSQTEM 367

  Fly   276 YSGSNPSTNPCQSAVQ-------NQGQNSNPNPNQNPNTNPNQNQQRCSCQPQTSPLPHIKEEEE 333
            ..|.:.:......::.       .:|....|..:.:....|: |....:.|..|..||.:...:.
  Fly   368 VVGRDSADYTAMHSINVGVGNSFLRGDTDIPQESGHSFETPS-NMSFTAGQWDTESLPPVDTPDA 431

  Fly   334 SDQANFKHQTSLK--EHQPLPPPITIA------------------------TGYCGSCESVH--- 369
            .::|..:.::.|:  :|:      |:|                        .|..|:|::::   
  Fly   432 LNKAAGRIRSLLRRMDHE------TVAYEDMQRNLHYAARVLEAVFIDESREGCNGNCKNLNCSR 490

  Fly   370 HS------------SATSSSAGTVPPGGQQTQEYIAGTSSTPSPRIKLKFRKPHKSCWSRIVLAP 422
            ||            |..|.|.....|||       ||...||                       
  Fly   491 HSHGRDDQQQDNNNSNRSCSLQEASPGG-------AGAGVTP----------------------- 525

  Fly   423 IGSAGGSSSATTVIGSNSNETLASSSTTGGTATTTQNSSSVSVAAHHRLTSSSASALATSHPSNS 487
                          |:::.:::  .|.|.|.:...|..|.                 .|..|||:
  Fly   526 --------------GADNQDSI--ESRTKGVSQAPQTHSG-----------------PTGPPSNT 557

  Fly   488 Q----LLPTSKMQAEQGSIGDLQKYHSRYLKNRRHTLANVRFDVENGQGARSPLEGGSPSAGLVL 548
            .    ..|..|:|.                     .|..||..|.....::.|.:.|.|      
  Fly   558 SSETIAQPAPKLQP---------------------ALETVRESVMEESPSKDPGDKGPP------ 595

  Fly   549 QNLPQRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEASILVDRSHGEDLIVTPFAQILASL 613
                                .|.|.|                                     :|
  Fly   596 --------------------PPASTS-------------------------------------TL 603

  Fly   614 RSVRNNLLSLTNVPASNKSRRPNQSSSASRSG---NPPGAPLSQGEEAYTRLATDTIEELDWCLD 675
            .|......|.|..|::..:.  :|:.||..||   ||...      ....||.|.|     |.  
  Fly   604 TSQTTTSSSATAEPSAKAAE--SQAGSAGSSGSCSNPAAV------HRQRRLRTPT-----WA-- 653

  Fly   676 QLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSG--NQISEYICSTF-----LDKQQEFDLP 733
                    ||:|..     |..|..|....||.....  .::.|::.|||     ..:::..:.|
  Fly   654 --------RSMSTN-----KTRLADEDDELSEVQPDAVPPEVREWLASTFTRQMATSRRKSDEKP 705

  Fly   734 SLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGERLPTFGVETP 798
            ..|      .||....||......|.|..|                        ..|..|..:..
  Fly   706 KFR------SVAHAIRAGIFVDRMYRRVSS------------------------SALTAFPPDVV 740

  Fly   799 RENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTSLMIPPKTFLNFMSTLEDH 863
            |      ||..||.|...:|::.|.:..:.:..|||.:|.....:....|.|.....|:..:|:.
  Fly   741 R------LLKNLDDWTFDVFALTEAASGQVVKYVAYELFNRYGSIHKFKIAPGILEAFLHRVEEG 799

  Fly   864 YVK-DNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSS 927
            |.: .||:||:|||.||.|:.:..|....|....|.||:..:|.||.:||.:|.|.||.|.|.|.
  Fly   800 YCRYRNPYHNNLHAVDVMQTIHYCLCNTGLMNWLTDLEIFASLLAALLHDYEHTGTTNNFHVMSG 864

  Fly   928 SELALMYNDESVLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKH---MS 989
            ||.||:|||.:||||||.:.:|:||:....:|..::.:::.:.||.:||::||.|||:.|   |.
  Fly   865 SETALLYNDRAVLENHHASASFRLLREDEYNILSHLSREEFRELRGLVIEMVLGTDMTNHFQQMK 929

  Fly   990 LLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQ 1054
            .:..|.|:.|..             .|:.:||..::||.|:|:|.|...::.||..||:||||.|
  Fly   930 AMRQLLTLQEAT-------------IDKQKVLSLVLHCCDISHPAKQWGVHHRWTMLLLEEFFRQ 981

  Fly  1055 GDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADL-------VHPDAQDILDTLEE 1112
            ||.|:|.|:..||:|||:|..:.:||:.|||:||.|.....:|:       :.|..:....||.|
  Fly   982 GDLEKELGLPFSPLCDRNNTLVAESQICFIDFIVEPSMGVMSDMLELILAPIAPMNKSKPATLVE 1046

  Fly  1113 NRDYYQS------MIPPSPPPSGVDENPQEDRIRFQVTLEESDQENLAELEEGDESGGESTTTGT 1171
            :.....|      :||.|.....:|: |::.|...:.|..|.    ||.             ...
  Fly  1047 HETTANSTTNSAIVIPNSGITPSMDK-PRDHRTEAKTTAAEC----LAR-------------KSV 1093

  Fly  1172 TGTTAA 1177
            |||||:
  Fly  1094 TGTTAS 1099

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dncNP_726846.1 PDEase_I 870..1111 CDD:278654 96/250 (38%)
Pde1cNP_001137817.1 PDEase_I_N 666..722 CDD:285672 13/61 (21%)
PDEase_I 807..1026 CDD:278654 94/231 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I1950
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D439875at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46491
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X171
66.020

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