DRSC/TRiP Functional Genomics Resources

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Protein Alignment dnc and Pde4c

DIOPT Version :9

Sequence 1:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster
Sequence 2:NP_001263694.1 Gene:Pde4c / 290646 RGDID:727918 Length:671 Species:Rattus norvegicus


Alignment Length:698 Identity:380/698 - (54%)
Similarity:478/698 - (68%) Gaps:89/698 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   485 SNSQLLPTSKMQAEQGSIGDLQK-------YHSRYLKNRRHTLANVRFDVENG-QGARSPLEGGS 541
            |.:.|||  .:.:..||.|:.:.       ..||..: |.|..|...||:||| ...|.||:..|
  Rat    40 SGTLLLP--PLSSRLGSSGEAESAAPVVFTIGSRGTE-RSHGSAQSSFDLENGLPSGRGPLDAQS 101

  Fly   542 PSA-GLVLQ---NLPQRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEASILVDRSHGEDLI 602
            .|: |..||   :..|||||||||||||.|.|||::||.||.||:             .||||:|
  Rat   102 GSSLGRALQPPVHHGQRRESFLYRSDSDHEPSPKAVSRTSSAASD-------------LHGEDMI 153

  Fly   603 VTPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASRS---GNPP-----GAPLSQGEEAY 659
            ||||||:|||||:||:|:.:|.           :.:.||:|.   |.||     .||   .||:.
  Rat   154 VTPFAQVLASLRTVRSNVAALA-----------HGAGSATRQALLGTPPQSSQQAAP---AEESG 204

  Fly   660 TRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSGNQISEYICSTFL 724
            .:||.:|:|||||||:||||:||.|||.:|||.|||||||:||:|.||:||||||:||||..|||
  Rat   205 LQLAQETLEELDWCLEQLETLQTRRSVGEMASNKFKRMLNRELTHLSETSRSGNQVSEYISQTFL 269

  Fly   725 DKQQEFDLPSLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGER 789
            |:|.|.:||:...||:|.                         ||:||:|:::. .|| |.....
  Rat   270 DQQAEVELPAPPTEDHPW-------------------------PMAQITGLRKS-CHT-SLPTAA 307

  Fly   790 LPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTSLMIPPKTFL 854
            :|.|||:|.:|.:|...|.:.:.||..:|.:.|.|.|||||.|.:::.|.|:||.:..||..|.|
  Rat   308 IPRFGVQTDQEEQLAKELEDTNKWGFDVFKVAELSGNRPLTAVIFSVLQERDLLKTFQIPADTLL 372

  Fly   855 NFMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLT 919
            .::.|||.||..:..:|||:|||||.||.:|||.|||||.|||.|||..|:||..||||||||::
  Rat   373 RYLLTLEGHYHSNVAYHNSIHAADVVQSAHVLLGTPALEAVFTDLEVLAAIFACAIHDVDHPGVS 437

  Fly   920 NQFLVNSSSELALMYNDESVLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDM 984
            ||||:|::|||||||||.||||||||||.|||||.:.||||.|:..||:.:||:||||:||:|||
  Rat   438 NQFLINTNSELALMYNDSSVLENHHLAVGFKLLQGENCDIFQNLSTKQKLSLRRMVIDMVLATDM 502

  Fly   985 SKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLME 1049
            |||||||||||||||||||...||||||||:||||||::||||||||||.||||||::|...:|.
  Rat   503 SKHMSLLADLKTMVETKKVTSLGVLLLDNYSDRIQVLQSLVHCADLSNPAKPLPLYRQWTERIMA 567

  Fly  1050 EFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENR 1114
            |||.|||:|||||:|||||||:|.|::|||||||||||.||||||||||||||||::|||||:||
  Rat   568 EFFQQGDRERESGLDISPMCDKHTASVEKSQVGFIDYIAHPLWETWADLVHPDAQELLDTLEDNR 632

  Fly  1115 DYYQSMIPPSPPPS-GVDENPQEDRIRFQVTLEESDQENLAELEEGDE 1161
            ::|||.:|.|||.: |      .||.:|::||||:::|     ||.||
  Rat   633 EWYQSRVPCSPPHAIG------PDRFKFELTLEETEEE-----EEEDE 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dncNP_726846.1 PDEase_I 870..1111 CDD:278654 183/240 (76%)
Pde4cNP_001263694.1 PDEase_I 388..629 CDD:278654 183/240 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 408 1.000 Domainoid score I676
eggNOG 1 0.900 - - E1_KOG3689
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 1 1.000 - - FOG0000302
OrthoInspector 1 1.000 - - otm44825
orthoMCL 1 0.900 - - OOG6_100782
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X171
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.680

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