DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dnc and pde3b

DIOPT Version :10

Sequence 1:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster
Sequence 2:XP_031756238.1 Gene:pde3b / 100487373 XenbaseID:XB-GENE-486086 Length:1015 Species:Xenopus tropicalis


Alignment Length:1187 Identity:268/1187 - (22%)
Similarity:393/1187 - (33%) Gaps:457/1187 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 CLPCRGGGSAAPATSPPQTPAQTPDELKVIPEDCNLEKSAEQKRDLLERNNKEDDLLNRTVSGSE 161
            ||...||...|.|:.|...|..:..|...:|.             :..|.......|..|.:   
 Frog   155 CLAGLGGVLLALASRPAPPPRSSILEADKVPV-------------IRPRRRSSCVSLGETPN--- 203

  Fly   162 LDLYGGAGGGTKKHSLADTIDTSVTTP-ISLKTLIN---DVDEELDQQLSAA------DIAAASL 216
             ..|||:..| ::.||          | ||.:.:|.   |:.:....|..:|      |::..:.
 Frog   204 -SYYGGSKMG-RRPSL----------PCISREQMILWDWDLKQWYKPQYQSAGGGNGVDLSVLNE 256

  Fly   217 ASGLVARRAEPETLSDASVSPTAVVQQQQQQQQQLQQPLLQSQPHFVPSSGNILSQVTLYSGS-N 280
            |..:||     :.|:|.|:|                       |..:.|..:|.|.:..:||| .
 Frog   257 ARNMVA-----DILADPSLS-----------------------PQVISSLRSISSLMGTFSGSCR 293

  Fly   281 PSTNPCQSAVQNQGQNSNPNPNQNPNTNPNQNQQRCSCQPQTSPLPHIKEEEESDQANFKHQTSL 345
            |..||           ..|.|...|          |:           :.|:..|:...|....|
 Frog   294 PKINP-----------FTPFPGFYP----------CN-----------EVEDPMDKVERKPHKGL 326

  Fly   346 KEHQPLPPPITIATGYCGSCESVHHSSATSSSAGTVPP-----------GGQQTQEYIAGTSSTP 399
            .....||.|                ....||.|..:||           |.:..||||       
 Frog   327 NSRNSLPTP----------------QLRRSSGASILPPMELPPRWERSNGKRPHQEYI------- 368

  Fly   400 SPRIKLKFRKPHKSCWSRIVLAPIGSAGGSSSATTVIGSNSNETLASSSTTGGTATTTQNSSSVS 464
                                        |:|.     ||..|...:|:..|    ...|.||||:
 Frog   369 ----------------------------GASQ-----GSYPNGPYSSNLLT----IPKQRSSSVT 396

  Fly   465 VAAHH---RLTSSSASALATSHPSNSQLLPTSKMQAEQGSIGDLQKYHSRYLKNRRHTLANVRFD 526
            : .||   |...:|.|....:.||                                         
 Frog   397 L-THHIGPRRAGTSPSLSPVNSPS----------------------------------------- 419

  Fly   527 VENGQG-ARSPLEGGSPSAGLVLQNLPQRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEAS 590
              :|.| :|:|:|            .|...: ||.:.......:|..:|     .|:.|:.|   
 Frog   420 --HGSGFSRAPVE------------FPDTAD-FLTKPSVTLHKTPGLVS-----TSQDFQPQ--- 461

  Fly   591 ILVDRSHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKS---------RRPNQSSSASRSGN 646
                       :..|.:.|..|..  |..|..|:|..|::.|         |.|.:|.:...|..
 Frog   462 -----------VRPPTSHICTSCG--RPILKHLSNTEATDTSSQSGTEHQARNPAESGTGGNSQK 513

  Fly   647 PPGAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSH--FSESS 709
            .||....:.:|  |||..||                 |:||:              :|  ::|..
 Frog   514 EPGHLKEKAQE--TRLHKDT-----------------RNVSE--------------THEPYTEPG 545

  Fly   710 RSGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISG 774
            ::|.:         .:.::|..|..:.:||.                                  
 Frog   546 QAGRE---------SEMKEESPLELMLIEDQ---------------------------------- 567

  Fly   775 VKRPLSHTNSFTGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFS---VNRPLTCVAYTI 836
                                         .:||..||.|...||.:.|.:   ..|.|:.|:||:
 Frog   568 -----------------------------DSLLDRLDNWNFPIFDLVERTGGKSGRILSQVSYTL 603

  Fly   837 FQSRELLTSLMIPPKTFLNFMSTLEDHYVKDNPFHNSLHAADVTQS------------------- 882
            ||...|.....||.:.|.||...||..| :|.|:||.:||.||..|                   
 Frog   604 FQDTGLFEIFKIPLREFQNFFRALESGY-RDIPYHNRIHATDVLHSVWYLSTRPIPGFHEIHSDE 667

  Fly   883 -----------TNVLL-----------------NTPALEGVFTPLEVGGALF-AACIHDVDHPGL 918
                       :.|.|                 |.||||.:        ||| ||.:||.||||.
 Frog   668 TDPDPDAEGGASQVFLTSKTCKLPDESYGCLSSNIPALELM--------ALFVAAAMHDYDHPGR 724

  Fly   919 TNQFLVNSSSELALMYNDESVLENHHLAVAFKLLQNQGCDIFCN-MQKKQRQTLRKMVIDIVLST 982
            ||.|||.:::..|::|||.|||||||.|.|:.|..:|....|.. :...|.:..|.:||:.:|:|
 Frog   725 TNAFLVATNAPQAVLYNDRSVLENHHAASAWNLFLSQPEHNFLTYLDHVQFKRFRFLVIEAILAT 789

  Fly   983 DMSKHMSLLADLKTMVETKKVAGSGVLLLD--NYTDRIQVLENLVHCADLSNPTKPLPLYKRWVA 1045
            |:.||...||:....|  ..|.|.|:   |  |..||:.|.:..:..||::.|.|...|:.:|..
 Frog   790 DLKKHFDFLAEFNAKV--NDVNGIGI---DWSNENDRLLVCQVCIKLADINGPAKTRELHLKWTE 849

  Fly  1046 LLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILD-- 1108
            .::.||:.|||:|...|:.|||..||....:.|.|..||.:||.||..::      ||..:|.  
 Frog   850 GIVNEFYEQGDEESSLGLPISPFMDRSAPQLAKLQESFITHIVGPLCNSY------DAAGLLPGR 908

  Fly  1109 TLEENRDYYQSMIPPSPPPSGVDENPQED---------RIRFQVTLEESDQEN----LAELEEGD 1160
            .|||:.:..:|...........:|..:||         |.|....|....:||    ...:||.:
 Frog   909 WLEEDEEVMESEDEDGEELDSEEEEMEEDINPKPQRRKRRRMFCRLIHHLRENHKAWKKTIEEEE 973

  Fly  1161 ESGGESTTTGTTGTTAA 1177
            :|..|.|...:....||
 Frog   974 KSKAEQTKQQSDDAPAA 990

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dncNP_726846.1 PDE4_UCR 603..725 CDD:465648 27/132 (20%)
PDEase_I 870..1110 CDD:459723 95/292 (33%)
pde3bXP_031756238.1 PDEase_I 636..906 CDD:459723 94/288 (33%)

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