DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10793 and SKD1

DIOPT Version :10

Sequence 1:NP_570054.2 Gene:CG10793 / 31308 FlyBaseID:FBgn0288967 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_180328.1 Gene:SKD1 / 817306 AraportID:AT2G27600 Length:435 Species:Arabidopsis thaliana


Alignment Length:445 Identity:145/445 - (32%)
Similarity:215/445 - (48%) Gaps:66/445 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 AMYLEYASFYNMKFGKYPKILKKVGAKIKVEMGGGKAHEKTPAK--ELPKKPPTTDASLANWHIG 134
            |::.:.|..||..|..|...|:.....:|.|. ..|..|....|  |..::.....|.|.....|
plant    16 AVHEDNAGNYNKAFPLYMNALEYFKTHLKYEK-NPKIREAITQKFTEYLRRAEEIRAVLDEGGSG 79

  Fly   135 VGAATQALSNEQPLQIKKMETATESNGQDNACEIEHVHLGGDDVLFSSLEWQSLAELVKTSILQE 199
            .|:...|....:|   |......|..|:|           |:|.     |...|...:.::|::|
plant    80 PGSNGDAAVATRP---KTKPKDGEGGGKD-----------GEDP-----EQSKLRAGLNSAIVRE 125

  Fly   200 NIKIKWSDVCGNQRAIELIKEAVLTPIEFPQLFAHGLKPWRSLLLHGPPGSGKTLLAKALYSETQ 264
            ...||||||.|.:.|.:.::|||:.|::|||.|....:|||:.||:||||:||:.||||:  .|:
plant   126 KPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAV--ATE 188

  Fly   265 GQVTFFNITASIMVSKWRGESEKILRVLFHMAAKRAPSVIFFDEIESLTSKRDRATDHESSKRFK 329
            ...|||::::|.:||||.|||||::..||.||.:.|||:||.|||:||...|....:.|:|:|.|
plant   189 ADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIK 253

  Fly   330 NELLQLLDGMEHSLNGVFVLASTNLPWDIDEAFLRRFEKKLLVQLPNAAERSCLINRLLGSS-IS 393
            .|||..:.|:.|:...|.|||:||.|:.:|:|..|||:|::.:.||.|..|..:....||.: .:
plant   254 TELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEAKARQHMFKVHLGDTPHN 318

  Fly   394 LNPRLLEQLVEISDHFTGDEIRLACKEISMHRVR------------------C------------ 428
            |.....|.|.:.::.|:|.::.:..|::....||                  |            
plant   319 LTEPDFEYLGQKTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKSPDGTWMPCGPRHPGAIQTTM 383

  Fly   429 ---ATKIGDRSIGLLAKESPAAI-EANVEKAFRQVRPLGQKL-LAKHEQWQQENG 478
               |||      ||..|..|..| ..:.||...:.||...|. |..||::.||.|
plant   384 QDLATK------GLAEKIIPPPITRTDFEKVLARQRPTVSKSDLDVHERFTQEFG 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10793NP_570054.2 LisH 31..55 CDD:462501
RecA-like_VPS4-like 208..372 CDD:410917 77/163 (47%)
SKD1NP_180328.1 cell_div_CdvC 7..431 CDD:468935 143/442 (32%)
RecA-like_VPS4 126..296 CDD:410929 82/171 (48%)
Blue background indicates that the domain is not in the aligned region.

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