DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10793 and vps4a

DIOPT Version :10

Sequence 1:NP_570054.2 Gene:CG10793 / 31308 FlyBaseID:FBgn0288967 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001070077.1 Gene:vps4a / 767670 ZFINID:ZDB-GENE-060929-388 Length:440 Species:Danio rerio


Alignment Length:361 Identity:126/361 - (34%)
Similarity:190/361 - (52%) Gaps:50/361 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 GAATQALSNEQPL---------QIKKMETATESNGQ-DNACEIEHVHLGGDDVLFSSLEWQSLAE 190
            |...|.|...:.|         |.||....|:||.: |:..|.|:.            |.:.|.|
Zfish    58 GKCMQYLDRAEKLKDYLKNKDKQGKKPVKETQSNDKSDSDSEGENP------------EKKKLQE 110

  Fly   191 LVKTSILQENIKIKWSDVCGNQRAIELIKEAVLTPIEFPQLFAHGLKPWRSLLLHGPPGSGKTLL 255
            .:..:|:.|...::||||.|.:.|.|.:||||:.||:||.||.....|||.:||.||||:||:.|
Zfish   111 HLMGAIVMEKPNVRWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 175

  Fly   256 AKALYSETQGQVTFFNITASIMVSKWRGESEKILRVLFHMAAKRAPSVIFFDEIESLTSKRDRAT 320
            |||:.:|.... |||::::|.::|||.|||||:::.||.:|.:..||:||.||::||...|:. .
Zfish   176 AKAVATEANNS-TFFSVSSSDLMSKWLGESEKLVKNLFDLARQHKPSIIFIDEVDSLCGSRNE-N 238

  Fly   321 DHESSKRFKNELLQLLDGMEHSLNGVFVLASTNLPWDIDEAFLRRFEKKLLVQLPNAAERSCLIN 385
            :.|:::|.|.|.|..:.|:.::.:|:.||.:||:||.:|.|..|||||::.:.||....||.:..
Zfish   239 ESEAARRIKTEFLVQMQGVGNNNDGILVLGATNIPWVLDAAIRRRFEKRIYIPLPEEPARSAMFR 303

  Fly   386 RLLGSS-ISLNPRLLEQLVEISDHFTGDEIRLACKEISMHRVR------------------CATK 431
            ..||:: .||....|.||...:|.::|.:|.:..::..|..||                  .|..
Zfish   304 LHLGNTPHSLTEADLRQLARKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRSNSAVI 368

  Fly   432 IGDRSIGLLAKESPAAIEANVEKAFRQVRPLGQKLL 467
            :.|    ||...||...|| :|..:..|.  |.|||
Zfish   369 VDD----LLTPCSPGDPEA-IEMTWMDVP--GDKLL 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10793NP_570054.2 LisH 31..55 CDD:462501
RecA-like_VPS4-like 208..372 CDD:410917 74/163 (45%)
vps4aNP_001070077.1 MIT_VPS4 4..79 CDD:239141 4/20 (20%)
RecA-like_VPS4 120..290 CDD:410929 77/171 (45%)
AAA_lid_3 317..358 CDD:465537 9/40 (23%)
Vps4_C 373..>403 CDD:462762 11/28 (39%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.