DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10793 and vps4b

DIOPT Version :10

Sequence 1:NP_570054.2 Gene:CG10793 / 31308 FlyBaseID:FBgn0288967 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001011154.1 Gene:vps4b / 496572 XenbaseID:XB-GENE-1001856 Length:443 Species:Xenopus tropicalis


Alignment Length:212 Identity:36/212 - (16%)
Similarity:65/212 - (30%) Gaps:96/212 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 KPSTIHTK------EKLMRSEGIIPIQAGSNKYASQKGMTGFGVPRDVIDKVK------------ 132
            :|.|:||:      ::..||.|:..:...:....:    ....:.|:|:||..            
 Frog   272 EPDTMHTRLKYSILQQTPRSPGLFSVHPSTGVITT----VSHYLDREVVDKYSLIMKVQDMDGQF 332

  Fly   133 ------SDNLAEITD--------------------------------EKKIAN----------LK 149
                  |..:..:||                                :|.:.|          ||
 Frog   333 FGLIGTSTCIITVTDSNDNAPTFRQNAYEAFVEENAFNVEILRIPIEDKDLINTANWRVNFTILK 397

  Fly   150 GSTWLQSGTNKFASQK--GQSGFGAVRDVNYKTKGTGGASEVPEEKARASDGIVPLQSGTNKLAS 212
            |:   ::|..|.::.|  .:.....|:.:||            ||..:     |.|:.|.|..|.
 Frog   398 GN---ENGHFKISTDKETNEGVLSVVKPLNY------------EENRQ-----VNLEIGVNNEAP 442

  Fly   213 QAGMTGIGMPRIVDVRR 229
            .|.    .:||:..:.|
 Frog   443 FAR----DIPRVTALNR 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10793NP_570054.2 LisH 31..55 CDD:462501
RecA-like_VPS4-like 208..372 CDD:410917 6/22 (27%)
vps4bNP_001011154.1 MIT_VPS4 7..76 CDD:239141
RecA-like_VPS4 127..297 CDD:410929 7/24 (29%)
AAA_lid_3 324..365 CDD:465537 3/40 (8%)
Vps4_C 380..440 CDD:462762 17/79 (22%)
Blue background indicates that the domain is not in the aligned region.

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