DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10793 and spg4

DIOPT Version :10

Sequence 1:NP_570054.2 Gene:CG10793 / 31308 FlyBaseID:FBgn0288967 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_594206.1 Gene:spg4 / 2543208 PomBaseID:SPAC328.04 Length:741 Species:Schizosaccharomyces pombe


Alignment Length:451 Identity:130/451 - (28%)
Similarity:216/451 - (47%) Gaps:87/451 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 KAHEKTPAKELP------KKPPTTDASLANWHIGVGAATQALSNEQPLQIKKMETATESNGQD-- 163
            ::|......|:|      .|..|:.|::|.....|.:.|::.| ..|....:.::|:....||  
pombe   297 QSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS-PTPQSAPRAQSASTETAQDLD 360

  Fly   164 -------------------------NACEIEHVHLGGDDVLFSSLE-------WQSLAELVKTSI 196
                                     ::||.:...:.||:....:.|       :||.:....||.
pombe   361 FLTPPRLSVNNPFLSDLYPASEQGLSSCEEKDSPVDGDEFFNHTNEEEIIEKQFQSTSISAMTSE 425

  Fly   197 LQENI------------------------KIKWSDVCGNQRAIELIKEAVLTPIEFPQLFAHGLK 237
            .||.|                        ::.|.|:.|.:.|...:||||:.|...|.||....:
pombe   426 KQEQILRECPDIDEELGKSILREIVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLRE 490

  Fly   238 PWRSLLLHGPPGSGKTLLAKALYSETQGQVTFFNITASIMVSKWRGESEKILRVLFHMAAKRAPS 302
            |.|.:||.||||:|||:||:|:.:|::.  .||:|:||.:.||:.|||||::|.||.:|.|.:||
pombe   491 PARGMLLFGPPGTGKTMLARAVATESRS--VFFSISASSLTSKFLGESEKLVRALFTLAKKLSPS 553

  Fly   303 VIFFDEIESLTSKRDR-ATDHESSKRFKNELLQLLDGMEHSLNG--------VFVLASTNLPWDI 358
            :||.|||:||.|.|.. ..:||:|:|.|.|.|.....:..:...        |.|||:|||||.|
pombe   554 IIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCI 618

  Fly   359 DEAFLRRFEKKLLVQLPNAAERSCLINRLL---GSSISLNPRLLEQLVEISDHFTGDEIRLACKE 420
            |:|..|||.::..:.||:...|...:|.||   ..|:||..  :|.:|:.:::::|.::....|:
pombe   619 DDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLED--IEAIVKATEYYSGSDLTALAKD 681

  Fly   421 ISMHRVRCATKIGDRSIGLLAKESPAAIEA-NVEKAFRQVRP-LGQKLLAKHEQWQQENGS 479
            .:|..:|   .:|: |:.....||...|.. :.:.:.:.:|| :..:.|.::.:|.:|.||
pombe   682 AAMGPLR---SLGE-SLLFTKMESIRPINLDDFKTSIKVIRPSVNLQGLERYSEWDKEFGS 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10793NP_570054.2 LisH 31..55 CDD:462501
RecA-like_VPS4-like 208..372 CDD:410917 75/172 (44%)
spg4NP_594206.1 RecA-like_VPS4-like 461..632 CDD:410917 75/172 (44%)
AAA_lid_3 658..711 CDD:465537 11/58 (19%)
Vps4_C <704..737 CDD:462762 6/32 (19%)
Blue background indicates that the domain is not in the aligned region.

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