DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sgs4 and LOC689840

DIOPT Version :9

Sequence 1:NP_476717.4 Gene:Sgs4 / 31304 FlyBaseID:FBgn0003374 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_001041444.1 Gene:LOC689840 / 689840 RGDID:1587540 Length:323 Species:Rattus norvegicus


Alignment Length:143 Identity:28/143 - (19%)
Similarity:68/143 - (47%) Gaps:0/143 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 SGSTCCKTEPPRCETEPPRCETEPPRCETEPPRCETTPPTCKTEPPTCKTEPPTCRTEPPTCKTE 83
            |.:...:.:|...:|:|...:.:|...:|:|...:..|...:|:|...:.:|...:|:|...:.:
  Rat    86 SSNRAVQIDPKAVQTDPRAVQIDPKAVQTDPRAVQIDPKAVQTDPRAVQIDPKAGQTDPRAVQID 150

  Fly    84 PPTCRTEPATCKTEPPTCRTEPPTCKTEPPTCRTEPPTCRTEPPTCKTEPPTCRTEPPTCKAEPP 148
            |...:|:|...:.:|...:.:|...:.:|...:.:|...:.:|...:|:|...:.:|...:.:|.
  Rat   151 PKAVQTDPRAVQIDPKAVQRDPRAVQIDPKAVQRDPRAVQIDPKAGQTDPRAVQIDPKAVQTDPR 215

  Fly   149 TCRTEPPTCKTEP 161
            ..:.:|...:|:|
  Rat   216 AVQIDPKAVQTDP 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sgs4NP_476717.4 PTZ00436 <18..158 CDD:185616 26/138 (19%)
LOC689840NP_001041444.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto97214
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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