Sequence 1: | NP_001101376.2 | Gene: | Chd7 / 312974 | RGDID: | 1311921 | Length: | 2985 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001137761.1 | Gene: | kis / 33185 | FlyBaseID: | FBgn0266557 | Length: | 5517 | Species: | Drosophila melanogaster |
Alignment Length: | 4459 | Identity: | 1247/4459 - (27%) |
---|---|---|---|
Similarity: | 1719/4459 - (38%) | Gaps: | 1697/4459 - (38%) |
- Green bases have known domain annotations that are detailed below.
Rat 14 GNIFSEGLEGLGECGYPENP-----VNPMGQQMPIDQGFPSLQPSLHH-PSPNQNQTKLTHFDHY 72
Rat 73 NQYEQKMHLMDQPNRMMGSAPGNGLASPHSQ--YHTPPV---PQVPHGGGSGGGQMGVYPGMQND 132
Rat 133 RHGQSFVDGGSMWGPRAVQVPD-QIRAPYQQQQPQPAPSGPPAQGHPQHMQQMGSYLARGDFSMQ 196
Rat 197 QPQQRMSQFSQGQEGLSQGSPFIATSGPGGHLSHMPQQSPNIAPSLRHPVQQQ------------ 249
Rat 250 --FHHHPAALHGESVAHSPRFSPNPPQQ---------GAVRPQTLN------------FSSRSQT 291
Rat 292 VPSPTVN---------NSGQYSPYPYRNLNQ------GLV--------------NSTGMNQNLGL 327
Rat 328 TNSTP-MNQSVPRYPNAVGFPSNSGQGL------MLQQP--IHSSG-SLNQMNTQTMHPSQPQGT 382
Rat 383 YASPP---------PMSPM----KAMSNPAGTPPPQVRPGSAGIPMDVGSYPNMPHPQPSHQ--- 431
Rat 432 ------------PPGAMGIGQRNMGPRNIQQPRPFMGMSSTPRELTGHMRPNGCPGVGLADAQAI 484
Rat 485 QERLIPGQQHPGQQPPF-QQLPTCPPLQPHPGLHQSSPPHPHHQPWAQLHPSPQNTPQKVPVRQH 548
Rat 549 SPSEPFLEKPVPDMTQVSGQNA-------------QLVKSDDYLPSIEQQPQQKKKKKKNNHIAA 600
Rat 601 GDPSKGFGKDDFPGGVD--NQEL-SRNSLDASQEETKKRKRPKVKKDPKELKEPREKKEPKTPKA 662
Rat 663 PKTPKEP----------------KERKA------------------KTVTPK------------- 680
Rat 681 -------------------PKSSKKSSNKK----------PDS---------------------- 694
Rat 695 -----------------EASALKKKVNKGK----TEGSENSDLDKTPPPSPGPEEDEDPGVQKRR 738
Rat 739 SSRQVKRKRYTEDLEFKISDE--------------------------------------EADDAD 765
Rat 766 AAGRD----------------SPSNTSQSEQQESVDA-------------------EGPVVEKIM 795
Rat 796 SSRLVK----------------------------------------------------------- 801
Rat 802 ----------------------------------------------------------------- 801
Rat 802 -----------------------------------------------------KQKES------- 806
Rat 807 -----GEE----------------------VEVEEFYVKYKNFSYLHCQWASVEDLEK-DKRIQQ 843
Rat 844 KIKRFKSKQGQS-KFLSEIEDDLFNPDYVEVDRIMDFARSTDD-RGEPVTHYLVKWCSLPYEDST 906
Rat 907 WELRQDLDQAKIEE---FEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWL 968
Rat 969 LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVV 1033
Rat 1034 VYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHR 1098
Rat 1099 LKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQ 1163
Rat 1164 VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1228
Rat 1229 NLLNTMMELRKCCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKA 1293
Rat 1294 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1358
Rat 1359 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGL 1423
Rat 1424 DKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTIT 1488
Rat 1489 IESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDAL--NGRNNLVIDTPRVRKQT 1551
Rat 1552 RLYSAVKEDELMEFSDLESDSEEKP-----CIKPRRPQDKTQ----------------------- 1588
Rat 1589 -------GYARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEHDVETICRAILVYCLNHYRGD 1646
Rat 1647 ENIKSFIWDLITPTADGQTRAL-LNHSGLSAPVPRGRKGKK------------------------ 1686
Rat 1687 ------------------VKAQSMQPVVQDA----DWLASCNPDA-LFQEDSYKKHLKHHCNKVL 1728
Rat 1729 LRVRMLYYLRQEVIGDQAEKILEGADSSEADVWIPEPFHAEVPADWWDKE-ADKSLLIGVFKHGY 1792
Rat 1793 EKYNSMRADPALCFLERVG---MPDAKAIAA------------------EQRGTDMLAD------ 1830
Rat 1831 -GGD-----------------------GGEFDREDEDPEYKPTRAPFKDEI-------------- 1857
Rat 1858 -------DEFANS--PPEDKEDSM-------------------EAQSTG---------------- 1878
Rat 1879 ----------------------------------------------------------------- 1878
Rat 1879 ---------KHSESNAELG---------------------QLYWPNTSSLTTRLRRLITAYQRSY 1913
Rat 1914 KRQQMR-------------------------------------------------------QEAL 1923
Rat 1924 MKT-------------------------------------------------------------- 1926
Rat 1927 ------------DRRRRRPREEVRALEAEREAIISEKRQ----KWTRREEADFYRVVSTFGV--- 1972
Rat 1973 IFDPVKQQF------DWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPAKPEDEPPDLASL 2031
Rat 2032 IEPITEERASRTLYRIELLRKIREQVLHHPQLSDRLKLCQPSLDLPEWWECGRHDRDLLVGAAKH 2096
Rat 2097 GVSRTDYHILNDPELSFLDAHKSFAQNRGASTVPSLNTLAMGFGQAPPVIAS--------AHAHE 2153
Rat 2154 EKVMEQA---------------------------------------------------------- 2160
Rat 2161 ---------------------------------------------------------------EG 2162
Rat 2163 KAEECEHSPAKERS----------DGKEEEEEAG-GAKDSRQECEAEASSVKGEL--KGVEGSGD 2214
Rat 2215 PGSKSVSEKGSEEDEE-EKL-------EDDDKSEESSQPEAGAVSRGKTFDEESNASMSTARDET 2271
Rat 2272 RDGFYMEDGDPSVAQLLHERT-----------------------------FAFSFWPKDRVMINR 2307
Rat 2308 LDNICEAVLKGKWPINRR------------------------QMFDFQGLVPGYPPSTVDSPLQK 2348
Rat 2349 RSFAELSMVSQASVSASEDITTS--PQL--SKDDALN---------------------------- 2381
Rat 2382 ------------------------LSVPR------QRRRRRRKVEIEAERAAKRRNLMEMVAQLR 2416
Rat 2417 ESQVVSENGQEKVVDLSKAS------REATSSTSN---------FSSLT-------SKFILPNVS 2459
Rat 2460 TP----------VSDAFKTQM-ELLQAG-------------LSRTPTRHVLNGSLVDGEPPMKRR 2500
Rat 2501 R----------------------GRRKNVEGLDLLFMSHKRTPLSAEDAEVTKAFEEDIETPPIR 2543
Rat 2544 NIPSPGQLDPDTRIPVINLEDGTRLVGEEAP---------------------------------- 2574
Rat 2575 ----------------KNKDLVDWL---------------------------------------- 2583
Rat 2584 --KLHPMYTVDMPSYVPKN---ADVLFSPF----------------------------------- 2608
Rat 2609 ---------------QKPKQKRHRCRNPNKLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLP 2658
Rat 2659 RWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTGPVVRGEGAS---RRGRRPKSEIA------ 2714
Rat 2715 ----RAAAAAAAVASTSGI---NPLLVNSLFAGMDLTSLQ--NLQNLQSLQLAGLMGFPPGLATA 2770
Rat 2771 ATAGGDAKGPAAVL----PLM------LPGMAGLP--------NVF----GLGGLLN-------- 2805
Rat 2806 -NPLSAATGNT---------------TTASSQGEPEDGTSKAEEKGNDNEDENRDSEKS--TDAV 2852
Rat 2853 SAADSANGSVGAATAPAALPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQN 2917
Rat 2918 AVGASEEKAADKAEGGPCKDGETLEGSDAEENLDKTIES 2956 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chd7 | NP_001101376.2 | Med15 | <2..>318 | CDD:312941 | 84/379 (22%) |
Atrophin-1 | 194..>582 | CDD:397323 | 105/503 (21%) | ||
CD1_tandem_CHD5-9_like | 785..849 | CDD:349315 | 35/294 (12%) | ||
CD2_tandem_CHD5-9_like | 868..925 | CDD:349310 | 33/60 (55%) | ||
PLN03142 | 956..>1555 | CDD:215601 | 429/600 (72%) | ||
BRK | 2552..2594 | CDD:400080 | 8/133 (6%) | ||
BRK | 2630..2674 | CDD:197800 | 24/43 (56%) | ||
kis | NP_001137761.1 | BASP1 | 1554..1786 | CDD:283191 | 15/231 (6%) |
HepA | 1676..2527 | CDD:223627 | 449/852 (53%) | ||
SDA1 | <1693..>1854 | CDD:283052 | 5/160 (3%) | ||
CHROMO | <1879..1919 | CDD:237991 | 23/39 (59%) | ||
Chromo | 1941..1996 | CDD:278797 | 31/54 (57%) | ||
DEXDc | 2048..2197 | CDD:238005 | 99/148 (67%) | ||
Helicase_C | 2350..2464 | CDD:278689 | 100/113 (88%) | ||
RR_TM4-6 | 3728..>3877 | CDD:283990 | 28/148 (19%) | ||
BRK | 4569..4613 | CDD:197800 | 24/43 (56%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 555 | 1.000 | Domainoid score | I234 |
eggNOG | 1 | 0.900 | - | - | E2759_KOG0384 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 1547 | 1.000 | Inparanoid score | I86 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0001075 | |
OrthoInspector | 1 | 1.000 | - | - | otm44575 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100621 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR45623 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X648 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
12 | 11.820 |