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Protein Alignment CG3939 and T05F1.11

DIOPT Version :9

Sequence 1:	NP_001284837.1	Gene:	CG3939 / 31295	FlyBaseID:	FBgn0040396	Length:	135	Species:	Drosophila melanogaster
Sequence 2:	NP_492564.2	Gene:	T05F1.11 / 172811	WormBaseID:	WBGene00011495	Length:	676	Species:	Caenorhabditis elegans

Alignment Length:	147	Identity:	36/147 - (24%)
Similarity:	54/147 - (36%)	Gaps:	43/147 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly    11 KEMENLIKLYEN----QRSPIYIYF-----YGEKDKDGR--------SWCPDCVAAEET-IMSAF 57
            ||..|.::...|    |..|::.:.     |.|:..||:        .||..  :.:.| |::.|
Worm   521 KEETNKMEQMNNCTFLQNVPLFRHLHPSGSYSERMLDGKVIGLYYSGYWCQP--SRDFTPILAQF 583

  Fly    58 RNHAPADCMILVVDVGSRESWI------GKDNMFRKP---PYS--------VEGIPTLIRWK--- 102
            .:....:..||.:.....|..:      ...:.|..|   |.|        ...|||||..|
Worm   584 YSQVDKNFEILFISSDRSEQEMNYYLQSSHGDWFHLPFDSPISKHLQQFNTKNAIPTLIIIKPNG 648

  Fly   103 GVERLDG-DQLLKSSLL 118
            .|..:|| ||:  ||.|
Worm   649 TVITVDGRDQV--SSFL 663

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.