DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment N and HAPLN3

DIOPT Version :9

Sequence 1:NP_001245510.1 Gene:N / 31293 FlyBaseID:FBgn0004647 Length:2703 Species:Drosophila melanogaster
Sequence 2:NP_001294881.1 Gene:HAPLN3 / 145864 HGNCID:21446 Length:422 Species:Homo sapiens


Alignment Length:447 Identity:83/447 - (18%)
Similarity:130/447 - (29%) Gaps:183/447 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   776 ICHCP---PGYTGK----------RCELDIDECSSNPCQHGGTCYDKLNAF---------SCQCM 818
            :|..|   ||.:.:          .|::    |...|...|...::::...         ....:
Human    20 VCPAPIPSPGLSAQTGLQKIWGTIHCQV----CPGAPAWPGSPWHEEMGLLLLVPLLLLPGSYGL 80

  Fly   819 PGYTGQKCETNIDDCVTNPCGNG-GTCIDKVNGYKCVCKVP----FTGRDCESKMDPCASNRCKN 878
            |.|.|.....:.:|   ...||| |.  |.:||.|.|.:.|    ||.:.. |.:.||..     
Human    81 PFYNGFYYSNSAND---QNLGNGHGK--DLLNGVKLVVETPEETLFTYQGA-SVILPCRY----- 134

  Fly   879 EAKCTPSSNFLDFSCTCKLGYTGRYCDEDIDECSLSSPCR----------NGASCLNVPGSYRCL 933
                                   ||      |.:|.||.|          |||...:|      |
Human   135 -----------------------RY------EPALVSPRRVRVKWWKLSENGAPEKDV------L 164

  Fly   934 CTKG--------YEGR---------DCAINTDDCASFPCQNGGTCLDGIGDYSCLCVDGFDGKH- 980
            ...|        |:||         |.::...|..          |:..|.|.|..:||.:.:. 
Human   165 VAIGLRHRSFGDYQGRVHLRQDKEHDVSLEIQDLR----------LEDYGRYRCEVIDGLEDESG 219

  Fly   981 -CETDINECLSQPCQNGATCSQYVNSYTCTCPLGFSGINCQTNDEDCTESSCLNGG------SCI 1038
             .|.::...:. |.|:               |.|....|.....:.|.|.:.:...      :..
Human   220 LVELELRGVVF-PYQS---------------PNGRYQFNFHEGQQVCAEQAAVVASFEQLFRAWE 268

  Fly  1039 DGINGYNCSCLAGY-SGANCQYKLNKCDSNPCLNGATC---------HEQNNEYTCHC------- 1086
            :|::.    |.||: ..|..||.: .....||......         |.:.:.|...|       
Human   269 EGLDW----CNAGWLQDATVQYPI-MLPRQPCGGPGLAPGVRSYGPRHRRLHRYDVFCFATALKG 328

  Fly  1087 -------PSGFTGKQCSEYVDWCGQSPC-ENGATCSQMKHQFSC-------KCSAGW 1128
                   |...|..:..|        .| |:.||.:::...|:.       :|.|||
Human   329 RVYYLEHPEKLTLTEARE--------ACQEDDATIAKVGQLFAAWKFHGLDRCDAGW 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NNP_001245510.1 EGF_CA 179..214 CDD:238011
EGF_CA 217..252 CDD:238011
EGF_CA 260..291 CDD:238011
EGF_CA 295..329 CDD:238011
EGF_CA 331..369 CDD:238011
EGF_CA 449..486 CDD:238011
EGF_CA 488..524 CDD:238011
EGF_CA 526..562 CDD:238011
EGF_CA 564..600 CDD:238011
EGF_CA 602..637 CDD:238011
EGF_CA 640..675 CDD:238011
EGF_CA 677..713 CDD:238011
EGF_CA 715..750 CDD:238011
EGF_CA 753..789 CDD:238011 4/25 (16%)
EGF_CA 791..827 CDD:238011 6/44 (14%)
EGF_CA 829..865 CDD:238011 13/40 (33%)
EGF_CA 907..943 CDD:238011 14/62 (23%)
EGF_CA 946..982 CDD:238011 7/37 (19%)
EGF_CA 984..1020 CDD:238011 5/35 (14%)
EGF_CA 1027..1058 CDD:238011 6/37 (16%)
EGF_CA 1062..1095 CDD:238011 7/55 (13%)
EGF_CA 1184..1219 CDD:238011
EGF_CA 1221..1257 CDD:238011
EGF_CA 1259..1295 CDD:238011
EGF_CA 1297..1335 CDD:238011
EGF_CA 1417..1450 CDD:238011
NL 1476..1512 CDD:197463
Notch 1519..1553 CDD:278494
Notch 1565..1593 CDD:278494
NOD 1599..1648 CDD:284282
NODP 1680..1731 CDD:284987
ANK 1896..2038 CDD:238125
ANK repeat 1902..1948 CDD:293786
ANK repeat 1951..1981 CDD:293786
Ank_5 1970..2025 CDD:290568
ANK 1978..2104 CDD:238125
ANK repeat 1984..2015 CDD:293786
ANK repeat 2017..2048 CDD:293786
Ank_2 2022..2114 CDD:289560
ANK repeat 2050..2081 CDD:293786
ANK repeat 2083..2114 CDD:293786
DUF3454 2627..2682 CDD:288764
HAPLN3NP_001294881.1 Ig_LP_like 124..229 CDD:143285 28/155 (18%)
IG_like 125..224 CDD:214653 28/149 (19%)
Link_domain_HAPLN_module_1 228..322 CDD:239595 18/114 (16%)
Link_domain_HAPLN_module_2 329..419 CDD:239596 12/57 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22804
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.