DRSC/TRiP Functional Genomics Resources

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Protein Alignment kirre and Lsamp

DIOPT Version :9

Sequence 1:NP_001245505.1 Gene:kirre / 31292 FlyBaseID:FBgn0028369 Length:956 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:348 Identity:72/348 - (20%)
Similarity:135/348 - (38%) Gaps:81/348 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 ITQGDYLVTTEDREIELECVSQGGKPAAEITWIDGLGNVLTKGIEYVKEPLAD-SRRITARSILK 254
            :.|||..:        |.||.:...  :::.|::..|.:.....::..:|..: .:|......|:
  Rat    60 VRQGDTAI--------LRCVVEDKN--SKVAWLNRSGIIFAGHDKWSLDPRVELEKRHALEYSLR 114

  Fly   255 LAPKKEHHNTTFTCQAQNTADRTYRSAKLLLEVKYAPKV--IVSVVGGALAGGKIPEGAEVILSC 317
            :.....:...::||..|...:.  :::::.|.|:..||:  |.|.|       .:.||:.|.|.|
  Rat   115 IQKVDVYDEGSYTCSVQTQHEP--KTSQVYLIV
QVPPKISNISSDV-------TVNEGSNVTLVC 170

  Fly   318 QADANPHELSYRW---------FINDELMTGDFTTKMIIHNVSRQYHDAIVKCEVVNAVGKSE-Q 372
            .|:..| |....|         |..:|       ..:.|..::|: .....:|:..|.|..:: :
  Rat   171 MANGRP-EPVITWRHLTPLGREFEGEE-------EYLEILGITRE-QSGKYECKAANEVSSADVK 226

  Fly   373 SKKLDISFGPVFRQRPVSVEADLGATVSMRCDVAGNPEPEIEWISENSDQVVGVAAELKLK---- 433
            ..|:.:::.|...:.. |.||..|...|::|:.:..|.|:.||..:  |..:..|..|::|    
  Rat   227 QVKVTV
NYPPTITESK-SNEATTGRQASLKCEASAVPAPDFEWYRD--DTRINSANGLEIKSTEG 288

  Fly   434 --------VSSETAGRYFCKAVVNGFPEIGAEATLYVKRAPII---------TSHKVQFG----- 476
                    |:.|..|.|.|.| .|......|...|:.:..|.:         |.|..|.|     
  Rat   289 QSSLTVTNVTEEHYGNYTCVA-AN
KLGVTNASLVLFKRVLPTVPHPIQEIGTTVHFKQKGPGSVR 352

  Fly   477 GVGGRVKIDCLAFSIPKAEHILW 499
            |:.|.:.:     ::|     ||
  Rat   353 GINGSISL-----AVP-----LW 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kirreNP_001245505.1 Ig 87..183 CDD:299845
IG_like 88..182 CDD:214653
C2-set_2 189..279 CDD:285423 14/88 (16%)
Ig_2 307..379 CDD:290606 17/81 (21%)
I-set 382..462 CDD:254352 24/91 (26%)
IGc2 396..446 CDD:197706 16/61 (26%)
Ig 466..561 CDD:299845 10/48 (21%)
IG_like 478..561 CDD:214653 4/22 (18%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 15/96 (16%)
FR1 55..71 CDD:409353 4/18 (22%)
Ig strand A' 56..62 CDD:409353 0/1 (0%)
Ig strand B 64..72 CDD:409353 3/15 (20%)
CDR1 72..76 CDD:409353 0/3 (0%)
FR2 77..84 CDD:409353 1/6 (17%)
Ig strand C 77..83 CDD:409353 1/5 (20%)
CDR2 85..95 CDD:409353 1/9 (11%)
Ig strand C' 87..90 CDD:409353 0/2 (0%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 5/34 (15%)
Ig strand D 100..107 CDD:409353 0/6 (0%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 2/7 (29%)
CDR3 132..136 CDD:409353 0/3 (0%)
Ig strand G 136..145 CDD:409353 1/10 (10%)
FR4 138..145 CDD:409353 1/6 (17%)
Ig_3 148..218 CDD:404760 19/85 (22%)
Ig strand A' 155..160 CDD:409353 2/11 (18%)
Ig strand B 166..173 CDD:409353 3/6 (50%)
Ig strand C 179..184 CDD:409353 1/4 (25%)
Ig strand D 190..193 CDD:409353 0/2 (0%)
Ig strand E 197..203 CDD:409353 1/5 (20%)
Ig strand F 210..217 CDD:409353 1/6 (17%)
Ig strand G 224..232 CDD:409353 1/7 (14%)
Ig_3 235..311 CDD:404760 21/79 (27%)
Ig strand B 252..256 CDD:409353 1/3 (33%)
Ig strand C 265..269 CDD:409353 1/3 (33%)
Ig strand E 290..294 CDD:409353 0/3 (0%)
Ig strand F 304..309 CDD:409353 2/4 (50%)
Ig strand G 318..321 CDD:409353 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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