DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and Nphs1

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_072150.1 Gene:Nphs1 / 64563 RGDID:620460 Length:1252 Species:Rattus norvegicus


Alignment Length:968 Identity:196/968 - (20%)
Similarity:322/968 - (33%) Gaps:320/968 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLLLATIVGMVRSSPYTSYQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGLGTSR 71
            |||:..:...:..||..:...|.|....::.|||.|..|.|.|.|......:||.||...||.:.
  Rat    25 LLLMGMLTSGLAESPVPTSAPQGFWALSENLTAVEGTTVKLWCGVRAPGSVVQWAKDGLLLGPNP 89

  Fly    72 DLSGFERYAMVGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPK 136
            .:.||.||::.|...:|::.|.|....|.|||.|:|||.....| |.:.|....|::||.|:...
  Rat    90 KMPGFPRYSLEGDRAKGEFHLLIEACDLSDDAEYECQVGRSELG-PELVSPKVILSILVSPKVLL 153

  Fly   137 IT--QGDVIYATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTD---NI-------------EYT 183
            :|  .|..:.....::..:.|||...|||.:||:|.. |..:.|   |:             |..
  Rat   154 LTPEAGSTVTWVAGQEYVVTCVSGDAKPAPDITFIQS-GRTILDVSSNVNEGSEEKLCITEAEAR 217

  Fly   184 VIP-------------------LPDQRRFT----------------------------------- 194
            |||                   .|.:..||                                   
  Rat   218 VIPQSSDNGQLLVCEGSNPALDTPIKASFTMNILFPPGPPVIDWPGLNEGHVRAGENLELPCTAR 282

  Fly   195 -----------------------------AKSVLRLTPKKEHHNTNFSCQAQNTADRTYRSAKIR 230
                                         |.|||.:|.:.|.|....|||:.|:.....:...|.
  Rat   283 GGNPPATLQWLKNGKPVSTAWGTEHAQAVAHSVLVMTVRPEDHGARLSCQSYNSVSAGTQERSIT 347

  Fly   231 VEVKYAPKVKVNVMGSLPGGAGGSVGGAGGGSVHMSTGSRIVEHSQVRLECRADANPSDVRYRWF 295
            ::|.:.|.. :.::||:...                      |:..|.|.|...::...|..||:
  Rat   348 LQVTFPPSA-ITILGSVSQS----------------------ENKNVTLCCLTKSSRPRVLLRWW 389

  Fly   296 INDEPIIGGQKTEM--------VIRNVT----RKFHDAIVKCEVQNSVGKSE---DSETLDISYA 345
            :....::...:|.|        .:.|:|    |:.:...:.||..:.....|   .|.||::.|.
  Rat   390 LGGRQLLPTDETVMDGLHGGHISMSNLTFLVRREDNGLPLTCEAFSDAFSKETFKKSLTLNVKYP 454

  Fly   346 PS---FRQRPQSMEADVGSVVSLTC-EVDSNPQPEIVWI------------QHPSDRVVGT--ST 392
            ..   ....|:......|:.|.|.| .:..||.|.::|.            |.|....:|:  .:
  Rat   455 AQKLWIEGPPEGQYIRTGTRVRLVCLAIGGNPDPSLIWFKDSRPVSEPRQPQEPRRVQLGSVEKS 519

  Fly   393 NLTFSVS-------NETAGRYYCKANVPGYAEISADAYVYLKGSPAIGSQRTQYGLV-------- 442
            ..|||..       .:...::.|||     .::||...:.::..|      |...::        
  Rat   520 GSTFSRELVLIIGPPDNRAKFSCKA-----GQLSASTQLVVQFPP------TNLTILANSSALRP 573

  Fly   443 GDTARIECFASSVPRARHVSWTFNGQEISSESGHDYSILVDAVP--GGVKS-TLIIRDSQAYHYG 504
            ||...:.|.:.|.....::||...|:.:     .|.:....:.|  |...| ::.:|.|...|..
  Rat   574 GDALNLTCVSISSNPPVNLSWDKEGERL-----EDVAAKPQSAPFKGSAASRSVFLRVSSRDHGQ 633

  Fly   505 KYNC---------TVVNDY-----------GNDVAEIQLQAKKSVSLLMTIVGGISVVAFLLVLT 549
            :..|         ||.:.|           |..|..:.:..:..|.|.:::....:..||.... 
  Rat   634 RVTCRAHSEALRETVSSFYRFNVLYPPEFLGEQVRAVTVVEQGQVLLPVSVSANPAPEAFNWTF- 697

  Fly   550 ILVVVYIKCKKRTKLPPADVISEHQITKNGGVS---------------CKLEPGDRTSNYSDLKV 599
                      :..:|.||.. ..|:|...|.:.               |:...|...:.   ||:
  Rat   698 ----------RGYRLSPAGG-PRHRILSGGALQLWNVTRADDGFYQLHCQNSEGTAEAL---LKL 748

  Fly   600 DISGGYVPYGDYSTHYSPPPQYLTTCSTKSN--GSSTIMQNNHQNQL--------QLQQQQQQSH 654
            |:            ||:|..:.|.. .|:.|  ||..|:.....|.:        :|.::::.  
  Rat   749 DV------------HYAPTIRALRD-PTEVNVGGSVDIVCTVDANPILPEMFSWERLGEEEED-- 798

  Fly   655 HQHHTQTTTLPMTFLTNSSGGSLTGSIIGSREIRQ-------------DNGL-PSLQSTTASVVS 705
                     |.:..:...|.|| ||.:    .|||             |||: |:.:.....||.
  Rat   799 ---------LNLDDMEKVSKGS-TGRL----RIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVR 849

  Fly   706 SSP---------NGSCSNQSTTAATT------------TTTHVVVPSSMALSVDPRYS 742
            .:|         ..:.:..||::||.            |.|...||..:.   ||||:
  Rat   850 FAPQVDQPTPLTKVAAAGDSTSSATLHCRARGVPNIDFTWTKNGVPLDLQ---DPRYT 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 34/95 (36%)
Ig 42..114 CDD:299845 27/71 (38%)
C2-set_2 135..225 CDD:285423 32/190 (17%)
Ig_3 265..329 CDD:290638 14/75 (19%)
I-set 346..420 CDD:254352 18/98 (18%)
Ig 360..425 CDD:299845 19/86 (22%)
Ig5_KIRREL3-like 428..524 CDD:143235 22/126 (17%)
IG_like 435..524 CDD:214653 21/119 (18%)
Nphs1NP_072150.1 Ig 52..128 CDD:299845 29/75 (39%)
IG_like 52..127 CDD:214653 28/74 (38%)
C2-set_2 155..242 CDD:285423 18/87 (21%)
Ig_3 256..335 CDD:290638 10/78 (13%)
IG_like 268..350 CDD:214653 12/81 (15%)
C2-set_2 358..440 CDD:285423 16/103 (16%)
I-set 460..555 CDD:254352 20/99 (20%)
Ig 472..555 CDD:299845 19/87 (22%)
Ig 563..646 CDD:299845 15/87 (17%)
IG_like 670..750 CDD:214653 14/94 (15%)
Ig 676..750 CDD:299845 14/88 (16%)
Ig_3 753..834 CDD:290638 18/97 (19%)
IG_like 762..848 CDD:214653 20/101 (20%)
Ig 848..956 CDD:299845 14/60 (23%)
IG_like 859..949 CDD:214653 12/49 (24%)
FN3 955..1049 CDD:238020
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1043..1067
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1113..1144
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141865at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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