DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and ush2a

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:969 Identity:184/969 - (18%)
Similarity:293/969 - (30%) Gaps:337/969 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPYTSYQNQRFAMEPQDQT--AVVGAR------------VTLPCRVINKQGTLQWTK-------- 62
            ||||.|..|......:..|  :||..|            :||..|......:..||:        
Zfish  1130 SPYTLYSYQLITSNIRSNTSSSVVTLRTLSAVPEQEELQLTLVGRAKPNSASFNWTEPLNTTGPI 1194

  Fly    63 DDFGLGTSRDLSGFERYAMVGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLT 127
            |::.|.:.:||||.:|....|...|.. :.::.|.     .||...:....:|..|...:....|
Zfish  1195 DNYTLSSIQDLSGEKRIYYTGLQTEAT-AEELQPF-----TRYNFSLKACTDGGCARSESLVVQT 1253

  Fly   128 VLVPPE---APKITQGDVIYATEDRKVEIE-CVSVGGKPAAEITWIDGLGNVLTDNIEYTVIPLP 188
            ..:|||   |||||    ...:...||:.| .|...|.......::..|..:..:...|..    
Zfish  1254 AQIPPEQQPAPKIT----TLGSSQLKVDWEPPVLPNGIIIRYELFMQLLNELQRNASSYGT---- 1310

  Fly   189 DQRRFTAKSVLRLTPKKEHHNTNFSCQAQNTA-------DRTYRSAKIRVEVKYAPKVKVNVMGS 246
            :||.|.:...|...|.....|.|.....::|.       ..|||   .||       :.||:.||
Zfish  1311 EQRVFLSSGWLNPRPSLSSANENALTPPESTVVVSNLQPFSTYR---FRV-------LTVNMAGS 1365

  Fly   247 LPGGAGGSVGGAGGGSVHMSTGSRI--VEHSQVRLECRADANPSDVR-----YRWFINDE----- 299
            :.  :..:||....|........::  |..|.:|:......: .|||     ||..::.|     
Zfish  1366 VL--SDWAVGRTAEGVPEYMAPPQVSAVSSSSLRVSWETPRD-KDVRGEVTEYRVNLHQEQMSNP 1427

  Fly   300 ---PII----------------GGQKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDS-ETLDIS- 343
               ||:                ||.|       ...::...:..|..|..|..|..| .||..: 
Zfish  1428 YAPPIVTQVLYSGSAQEHSYTAGGLK-------AYEEYSFTVTVCNRQGCVSSSPASGRTLPSAP 1485

  Fly   344 ---YAPSFRQRPQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPSDRVVGTSTNLTFSVSNETAGR 405
               .||..  ||.:|.|                 ..:.|                          
Zfish  1486 AGLRAPGL--RPLNMTA-----------------MNVFW-------------------------- 1505

  Fly   406 YYCKANVPGYAEISADAYVYLKGSPAI-GSQRTQYGL---VGDTARIECFASS----VPRAR-HV 461
                           ||...|.|.|.: ..:||...|   .|...|...|..|    .|.|. .|
Zfish  1506 ---------------DAPAELNGPPPLYHVERTDVSLSDAQGQVIRGRRFTGSGFFRFPSATLPV 1555

  Fly   462 SWTFNGQEISSESGHDYSILVDAVPGGVKS---TLIIRDSQAYHYGKYNCTVV-----NDYG--- 515
            :..|.|.::|..:..:..:|:.||..|.:.   .|.|.:.:.|.......:.|     ||.|   
Zfish  1556 NADFTGLQLSFRTRAEEGLLLFAVSPGEQEEYVALQIHNGRPYFLFDPQASAVALSPRNDGGRRY 1620

  Fly   516 ND-----------------VAEIQLQAKKSVSLLMTIVG---GISVVAFLLVLTIL--------- 551
            ||                 :.:.|.....|.:...||:|   |:.:.......|||         
Zfish  1621 NDNQWHHLIATRKQAVGTIIVDNQYSGSASATSGSTIIGQNTGVFIGGIPENFTILRQDAGQAKL 1685

  Fly   552 -----------VVVYIKCKKRTKLPPAD---VISEHQ----------ITKNGGV-----SCKLEP 587
                       |:|...........|.|   .:..|:          :::||..     ..|::|
Zfish  1686 VQQGFAGCLRDVLVQKSSGANEAWEPLDWESALETHETYESWEGCPAVSENGAYFLGHGFLKVKP 1750

  Fly   588 GDRT-SNYSDLK-------------------------VDISGG----YVPYGDYSTHYSPPPQYL 622
            ...| .||.::.                         .::.||    .:.:|:.:...|.... |
Zfish  1751 EILTGGNYFEISFEFKTDQLNALLLFAYDIDGKDFILAELQGGVLFWVLRWGEQTVELSVWVG-L 1814

  Fly   623 TTCSTKSNGSSTIMQNNHQNQLQLQQQQQQSHHQHHTQTTTLPMTFLTNSSGGSLTGS---IIGS 684
            :.|....| :.::::..|.....|....:|..                .:.||.||.|   .||.
Zfish  1815 SYCDGGWN-TLSVLKRGHLASAGLNDMYEQER----------------KAIGGPLTISSPLYIGG 1862

  Fly   685 -----------------------REIRQDNG-LPSLQSTTASVVSSSPNGSCSNQSTTAATTTTT 725
                                   |::|...| :.||.:.::|.|..:.:| |.:..|:.......
Zfish  1863 VPPGVTHPALNKHSLLHGFGGCIRDVRLARGPVVSLAAVSSSAVRVNLDG-CLSADTSVNCRGND 1926

  Fly   726 HVVV-----PSSMALSVDPRYSAIY-----------GNPYLRSSNSSLLP----PPTAV 764
            .::|     .|:..|::.|....:|           |.|:.|..:...:|    ||:.|
Zfish  1927 SILVYTGRDRSAEDLTLQPFTEYLYRVMASGEGGWIGGPWQRGRSRETVPQSVLPPSRV 1985

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 24/117 (21%)
Ig 42..114 CDD:299845 18/91 (20%)
C2-set_2 135..225 CDD:285423 20/97 (21%)
Ig_3 265..329 CDD:290638 15/94 (16%)
I-set 346..420 CDD:254352 6/73 (8%)
Ig 360..425 CDD:299845 3/64 (5%)
Ig5_KIRREL3-like 428..524 CDD:143235 29/132 (22%)
IG_like 435..524 CDD:214653 27/124 (22%)
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486
EGF_Lam 529..577 CDD:238012
EGF_Lam 586..638 CDD:238012
Laminin_EGF 653..703 CDD:278482
Laminin_EGF 706..756 CDD:278482
EGF_Lam 759..797 CDD:214543
Laminin_EGF 808..857 CDD:278482
EGF_Lam 859..912 CDD:238012
EGF_Lam 913..963 CDD:238012
EGF_Lam 965..1014 CDD:238012
EGF_Lam 1015..1064 CDD:238012
FN3 1177..1253 CDD:238020 16/81 (20%)
FN3 1264..1375 CDD:238020 30/130 (23%)
FN3 1386..1469 CDD:214495 15/90 (17%)
LamG 1537..1699 CDD:238058 31/161 (19%)
LamG 1737..1890 CDD:238058 24/170 (14%)
FN3 1981..2071 CDD:238020 3/5 (60%)
FN3 2163..2253 CDD:238020
FN3 2258..2341 CDD:238020
FN3 2352..2443 CDD:238020
FN3 2447..2544 CDD:238020
FN3 2547..2633 CDD:238020
FN3 2635..2733 CDD:238020
FN3 2743..2807 CDD:238020
FN3 2830..2932 CDD:238020
fn3 2939..3014 CDD:278470
FN3 3032..>3099 CDD:238020
FN3 3542..3611 CDD:238020
FN3 3615..3701 CDD:238020
fn3 3718..3784 CDD:278470
FN3 3801..3887 CDD:238020
FN3 3908..3971 CDD:238020
FN3 3996..4086 CDD:238020
FN3 4186..4284 CDD:238020
fn3 4288..4366 CDD:278470
FN3 4382..4465 CDD:238020
FN3 4470..4553 CDD:238020
FN3 4555..4653 CDD:238020
FN3 4679..4753 CDD:238020
fn3 4760..4830 CDD:278470
FN3 4864..4955 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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