DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and robo4

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:XP_689255.3 Gene:robo4 / 560765 ZFINID:ZDB-GENE-020809-1 Length:1134 Species:Danio rerio


Alignment Length:696 Identity:148/696 - (21%)
Similarity:236/696 - (33%) Gaps:235/696 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 HMSTGS---------RIVEH---------SQVRLECRADANPSDVRYRWFINDEPI----IGGQK 306
            |...||         |||.|         |...|.|||:.|| :...:|..|.:|:    :..|.
Zfish    57 HRRKGSRLVSEINLPRIVHHPSDVVVRVGSPATLSCRAEGNP-EPTIQWLRNGQPLDTDKMDAQS 120

  Fly   307 TEMVIRNVTRKF-----------HDAIVKCEVQNSVGKSED-SETLDI-SYAPSFRQRPQSMEAD 358
            ..:|:.:.:..|           |:|:..|...||:|.:.. :.:|.| :....||.:|..:|..
Zfish   121 QPIVLPDGSLFFFSVVPGRKGQSHEAVYACIAHNSIGNATSRNASLHIAALREDFRVQPSDVEVA 185

  Fly   359 VGSVVSLTCEVD-SNPQPEIVWIQHPSDRVVGTSTNLTFS----------VSNETAGRYYCKA-N 411
            :|.:.::.|... .:|:|.:.|   ..|.::..|:|..::          .....:|.|.|.| |
Zfish   186 IGEMATINCSPPVGHPEPNVTW---RKDGILINSSNEHYTELKGKLIIAPAQKNDSGVYSCIASN 247

  Fly   412 VPGYAEISADAYVYLKGSPAIGSQRTQYGL-VGDTARIECFASSVPRARHVSWTFNGQEISSESG 475
            :.|..| |..|.:.:...|.:..:.....: :|::|:..|.|...|.. .:.|       |.|.|
Zfish   248 MIGVRE-SRAARLSVLAKPVLLRKPEDVSVQLGESAQFFCEADGDPMP-SIEW-------SREQG 303

  Fly   476 HDYSILVDAVPGGVKSTLIIRD-SQAYHY------GKYNCTVVNDYGNDVAEIQLQAKKS----- 528
                    .:|.|  ..||..| |...||      |:|:|||.|..|..||..||..:.:     
Zfish   304 --------PLPNG--RYLINPDHSLQIHYVTAQDMGRYSCTVENKLGVSVASAQLLVEDAGGTRL 358

  Fly   529 -----------VSL----LMTIVGGISVVAFLL--------VLTILVVVYIKCKKRTKLP----- 565
                       |||    :|:....:|.|.:.|        .|....|:|     |:.||     
Zfish   359 RDLHKELSALRVSLENVTVMSTASNMSQVMWKLQSFGSQPHYLEGFEVLY-----RSLLPASSDW 418

  Fly   566 -----PADVISEH--QITKNGGVSCKLEP-GD----RTSNYSDLKV----------DISGGYVPY 608
                 |...:..|  .:.:......|:.| |.    |.||...|:|          |:|......
Zfish   419 TAQRVPQPSLHTHVGPLKRGYKYEFKVRPYGSSLYGRESNTRHLRVPEIVPSAAPQDVSITMPAE 483

  Fly   609 GDYSTHYS--PPPQ---------YLTTC---------------STKS------------------ 629
            .:.:.|.|  |||.         |...|               .|.|                  
Zfish   484 RNDTVHLSWEPPPHDAHNGIIQGYQVWCVESEEQTSFNWTVDSGTHSIEIFTLLPSRLYWVTVAA 548

  Fly   630 -NGSSTIMQNNHQNQLQLQQQQQQSHHQHHTQTTTLPMTFLTN--------SSGGSL-------T 678
             ||:...:|:: ..:|.::.:.:.:.:    ||..|.|:...:        .|.|:|       |
Zfish   549 VNGAGVGVQSD-PYKLLIESRLEATPY----QTGILSMSHFVSVIKEPVFIGSVGTLLWCVLMIT 608

  Fly   679 GSIIGSREIRQDN------GLPSLQSTTASV-----VSSSP-------NGSCS---------NQS 716
            ...:..|.||..|      ||..|:|....:     ...||       .||.|         :|.
Zfish   609 AVFLYRRHIRPANPSGKSSGLYRLESEDLIIKHRMAAPDSPWISGGWRPGSNSEPKQGLWTPSQE 673

  Fly   717 TTAATTTTTHVVV-----PSSMALSVDPRYSAIYGNPYLRSSNSSL 757
            .:....||..:.|     |...|:.:.|....:||..|:..:.:.|
Zfish   674 NSGLRRTTLPITVKKDPNPLRSAVPIVPDNCGVYGTFYVDLTGNGL 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653
Ig 42..114 CDD:299845
C2-set_2 135..225 CDD:285423
Ig_3 265..329 CDD:290638 22/96 (23%)
I-set 346..420 CDD:254352 19/85 (22%)
Ig 360..425 CDD:299845 17/76 (22%)
Ig5_KIRREL3-like 428..524 CDD:143235 28/103 (27%)
IG_like 435..524 CDD:214653 27/96 (28%)
robo4XP_689255.3 Ig1_Robo 70..169 CDD:143317 24/99 (24%)
I-set 71..168 CDD:254352 24/97 (25%)
I-set 175..261 CDD:254352 21/89 (24%)
Ig2_Robo 177..261 CDD:143201 19/87 (22%)
I-set 265..350 CDD:254352 29/102 (28%)
Ig 282..350 CDD:299845 27/85 (32%)
FN3 373..448 CDD:214495 13/79 (16%)
FN3 472..560 CDD:238020 14/88 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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