DRSC/TRiP Functional Genomics Resources

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Protein Alignment rst and lrit1a

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001018174.2 Gene:lrit1a / 553943 ZFINID:ZDB-GENE-040924-5 Length:643 Species:Danio rerio


Alignment Length:206 Identity:40/206 - (19%)
Similarity:82/206 - (39%) Gaps:69/206 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 PSDVRYRWFINDEPIIGGQKTEMVIRNVTRKFHDA--IVKCEVQNSVGKSEDSETLDISYAPSFR 349
            |::|...| :..:|.:|.:.:::::     ..||.  :..|.:.:.| :.:.|.:|.:::..: |
Zfish   171 PAEVL
NTW-LTIKPTLGAESSKLIL-----GLHDNPWLCDCRLYDLV-QFQKSPSLSVAFIDT-R 227

  Fly   350 QR---PQSM-------------------------EADVGSVVSLTCEVDSNPQPEIVW------- 379
            .|   |:|:                         .:.||:.|.|.|.....|.||:.|       
Zfish   228 LRCADPESLSGVLFSDAELRRCQGPRVHTAVARVRSAVGNNVLLRCGTVGVPIPELAWRRADGKP 292

  Fly   380 ------IQHPSDRVVGTSTNLTFSVSNETAGRYYCKANVPGYAEISADAYVYLKGSPAIGSQRTQ 438
                  :::..:.:|.:..::. :||....|:|.|||.  .||. ||:|.:.|            
Zfish   293 LNGTVLLENSKEGIVWSILSVP-AVSYRDTGKYICKAT--NYAG-SAEAVISL------------ 341

  Fly   439 YGLVGDTARIE 449
              ::.|..::|
Zfish   342 --IINDAPKME 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653
Ig 42..114 CDD:299845
C2-set_2 135..225 CDD:285423
Ig_3 265..329 CDD:290638 8/43 (19%)
I-set 346..420 CDD:254352 23/114 (20%)
Ig 360..425 CDD:299845 21/77 (27%)
Ig5_KIRREL3-like 428..524 CDD:143235 2/22 (9%)
IG_like 435..524 CDD:214653 2/15 (13%)
lrit1aNP_001018174.2 leucine-rich repeat 61..84 CDD:275378
LRR_8 63..119 CDD:290566
LRR_RI <77..175 CDD:238064 1/3 (33%)
leucine-rich repeat 85..108 CDD:275378
LRR_8 108..167 CDD:290566
leucine-rich repeat 109..132 CDD:275378
leucine-rich repeat 133..156 CDD:275378
leucine-rich repeat 157..170 CDD:275378
LRRCT 199..243 CDD:214507 8/45 (18%)
I-set 252..343 CDD:254352 23/108 (21%)
Ig 259..333 CDD:299845 18/76 (24%)
fn3 448..515 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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