DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and side-IV

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster


Alignment Length:1054 Identity:206/1054 - (19%)
Similarity:345/1054 - (32%) Gaps:424/1054 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 MQLLLLATIVGMVRSSPYTSYQNQRFAMEPQDQ-------TAVVGARVTLPCRVINKQGTLQWTK 62
            :.||:|:.|     |...::|..|...|:..|:       ..|:|.:..|||.:..::      :
  Fly    47 LPLLMLSGI-----SQVCSTYVEQDELMQNLDRPVPLTTVQGVLGRQAMLPCDISPQE------R 100

  Fly    63 DD-------FGLGTSRDLSGFE-RYAMVGS----------DEEGDYSLDIYP-------VMLDDD 102
            ||       |..|....:..|: |....|.          .....:|...:|       :.::|:
  Fly   101 DDAVYMVLWFREGDGEPIYNFDVRGRQFGQARLWSSPTAFGTRAHFSSTTHPAQLKIDNIRIEDE 165

  Fly   103 ARYQCQV----SPGPEGQPAIRSTFAGLTVLVPPEAPKI-------TQGDVIYATEDRKVEIECV 156
            ..|:|:|    ||       .|:....|||:|||:.|.|       ..|:|...:|...:.:.|.
  Fly   166 GVYRCRVDFRNSP-------TRNLKINLTVIVPPDRPVIYGQNRHEKAGNVESFSEGNDIVLSCE 223

  Fly   157 SVGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDQRRFTAKSVLRLT-PK--KEHHNTNFSCQAQN 218
            ..||:|...:||.          ::.|.|....::|...|::..|: |.  ::|.|:...|.|.|
  Fly   224 VSGGRPRPNVTWY----------LDNTAIDESFEQRPDGKTINHLSYPNVGRQHLNSRLMCVASN 278

  Fly   219 TADRTYRSAKIRVEVKYAPKVKVNVMGSLPGGAGGSVGGAGGGSVHMSTGSRIVEHSQV-RLECR 282
            |......:..:.::|...|.                       :||:.|..|.|...:. .:||:
  Fly   279 TNLTPPNNRVVILDVNLKPI-----------------------AVHILTKDRFVSADRTYDVECK 320

  Fly   283 ADANPSDVRYRWFINDEPIIGGQKTEMVIRNVTRKFHD-------------------AIVKCEVQ 328
            :..:.......|:          |....::.:|:.|::                   ..:.|..:
  Fly   321 SSGSKPPALITWW----------KGSKQLKKLTKNFNEPDNQSLSILTFTPGREDDGKYLTCRAE 375

  Fly   329 NSV--GKS-EDSETLDISYAPSFRQR-PQSMEAD---VGSVVSLTCEVDSNPQP-EIVW------ 379
            |..  |.: ||...|.:.|.|:...: ..|:..|   .|......|.|.:||:| ::.|      
  Fly   376 NQFIDGSAIEDKWRLIVHYQPTTTLKIGSSLNPDDIKEGDDAYFECIVLANPKPYKMSWFHNGKE 440

  Fly   380 IQHP-SDRVVGTSTNLTF-SVSNETAGRYYCKA-NVPG------------YAEISADAYVYLKGS 429
            :||. |..|:.:..:|.. |||..:||.|.|.| |..|            ||.|.|..:..|.|:
  Fly   441 LQHNISAGVILSDQSLVLQSVSRASAGDYTCLAVNSEGKGPSNPVTLRIRYAPICATDHEELLGA 505

  Fly   430 PAIGSQRTQYGLVGDTARIECFASSVPRARHVSWTFN--GQEI-------SSESGH--------- 476
                       |..:|..::|...|.|.|....||||  |::.       |||:|.         
  Fly   506 -----------LKHETLPLKCEVDSSPPADSFQWTFNSSGEQTELPARLHSSETGMSRLNYTPST 559

  Fly   477 --DY------------------------------------------SILVDAV---PGGVKS--- 491
              ||                                          |:.||.:   .||:..   
  Fly   560 DLDYGTISCWAKNSIGTQKSPCVFQIVAAGRPFPLQNCSVTNQSVDSLQVDCLEGFDGGLPQGFM 624

  Fly   492 ----------------------TLIIRD-SQAYHY----------GKYNCTVVNDYG-NDVAEIQ 522
                                  |.:|.: .||..|          |:...|:::|.. ..||:. 
  Fly   625 LELVELNTLRLARNITVSHTPVTFVIDNLDQAATYRMVIFAVNAKGRSEPTIIDDINFKGVAKF- 688

  Fly   523 LQAKKSVSL-LMTIVGGISV---VAFLLVLTILVVVY-----------IKCKKRTKLP-PADVIS 571
            ..|...:|: |...:.|:::   :.|.:...:|..:|           :|..|.|:|. |||   
  Fly   689 TGASTGLSMPLSPFLAGLTLFCGLLFAIFCIMLAAIYRRISNRRSDSNLKVAKHTQLTIPAD--- 750

  Fly   572 EHQITKNGGVSCKLEP----------GDRTSNYSDLKV--------------DISGGYVPYG--- 609
                       |:|:|          |:...::|.|.:              |:.||.|..|   
  Fly   751 -----------CQLDPLHPGVQTDGSGNHQPHHSLLPLNCDGRNAVDCGALGDVGGGGVGVGLDG 804

  Fly   610 --------------------DYSTHYSP---------------PPQY-------LTTCSTKSNGS 632
                                :....:||               |.||       |.:....::.|
  Fly   805 GIKGSSPIGLVAMPGDTLRSNARNRHSPMADQADIDDTDPDVIPNQYEKRPLKSLVSPPGFASPS 869

  Fly   633 STIMQNNHQNQLQLQQQQQQSHHQHHTQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNGL---- 693
            :.:||.::..:.:|                         :.|||..|  :|:.|.....||    
  Fly   870 NRLMQRDYLRETEL-------------------------TKGGSDVG--MGAAEGLSSIGLMSSS 907

  Fly   694 ----------PSLQSTTASV------VSSSPNGSCSNQSTTAATTTTTHVVVPSSMALS-VDPRY 741
                      ||.|.:.|::      ..|.|.||. |.|.:.:|.|:::.:.|..|.:| :.|  
  Fly   908 GNEVLHYTFRPSKQISYATLNKKGITTCSPPLGSL-NYSVSTSTPTSSYHLTPQPMEVSLLSP-- 969

  Fly   742 SAIYGNPYLRSSNS 755
                .||.:.||.|
  Fly   970 ----NNPSVTSSLS 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 25/131 (19%)
Ig 42..114 CDD:299845 19/100 (19%)
C2-set_2 135..225 CDD:285423 23/99 (23%)
Ig_3 265..329 CDD:290638 10/83 (12%)
I-set 346..420 CDD:254352 28/99 (28%)
Ig 360..425 CDD:299845 26/86 (30%)
Ig5_KIRREL3-like 428..524 CDD:143235 33/197 (17%)
IG_like 435..524 CDD:214653 32/190 (17%)
side-IVNP_001034052.2 V-set 79..188 CDD:284989 22/121 (18%)
IG_like 80..188 CDD:214653 22/120 (18%)
Ig 210..281 CDD:299845 19/80 (24%)
Ig 319..392 CDD:299845 11/82 (13%)
IG_like 319..383 CDD:214653 8/73 (11%)
IG_like 412..489 CDD:214653 22/76 (29%)
IGc2 413..478 CDD:197706 21/64 (33%)
Ig_3 509..572 CDD:290638 16/62 (26%)
fn3 593..675 CDD:278470 11/81 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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