DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and Dscam1

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:910 Identity:165/910 - (18%)
Similarity:288/910 - (31%) Gaps:295/910 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 MEPQDQTAVVGARVTLPCRVI-NKQGTLQWTKDDFGLGTSRDLSGFERYAMVGSDEEGDYSLDIY 95
            ::|..||...|......|:.. |...|:.|.||...:|.|..:                  |.|.
  Fly   351 IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSEPV------------------LRIE 397

  Fly    96 PVMLDDDARYQCQVSPGPEG--------------QPAIRSTFAGLTVLVPPEAPKITQGDVIYAT 146
            .|..:|...|||.|....|.              .|.||..|...|:...|              
  Fly   398 SVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGP-------------- 448

  Fly   147 EDRKVEIECVSVGGKPAAEITW-IDG----------LGNVLT---DNIEY--------------- 182
               .|.::||: ||.|..||:| :||          :|..:|   |.:.|               
  Fly   449 ---SVFLKCVA-GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 509

  Fly   183 ----------------TVIPLPDQRRFTAKSVL-------------------------RLTP--- 203
                            .|..||..|:...|:::                         |..|   
  Fly   510 CIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR 574

  Fly   204 ---------------KKEHHNTNFSCQAQNTADRTYRSAKIRVEVKYAPKVKVNVMGSLPGGAGG 253
                           ::......::|.|:|....:.|.: :.|:|...|::              
  Fly   575 KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGS-LEVQVMVLPQI-------------- 624

  Fly   254 SVGGAGGGSVHMSTGSRIVEHSQVRLECRADANPSDVRYRW----------FINDEPIIG----G 304
             |..|....::|.        ..:.|.|:.......::..|          |...:|.:.    .
  Fly   625 -VPFAYEDLINMG--------DSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRIS 680

  Fly   305 QKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDSETLDISYAPSFRQRPQSMEADVGSVVSLTCEV 369
            :||.|:........|.....|...|..|.:..|..|.::..|.:...|.......||...:.|:.
  Fly   681 EKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKA 745

  Fly   370 DSNPQPEIVWIQHPSD-----RVVGTSTNL-----TFSVSN---ETAGRYYCKANVPGYAE-ISA 420
            |..|:|::.|.:...|     :.:..|.|:     |..|.|   ...|.|.|:| :.|... :||
  Fly   746 DGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA-INGIGSGLSA 809

  Fly   421 DAYVYLKGSPAIGSQ-RTQYGLVGDTARIECFASSVPRARHVSWTFNGQEISSESGHDYSILVDA 484
            ...:.::..|....: |.|....|:.|.::|.|.. .:...:.|..|...:..::.:.|:|..:.
  Fly   810 VIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKG-EKPIGILWNMNNMRLDPKNDNRYTIREEI 873

  Fly   485 VPGGVKSTLIIRDSQAYHYGKYNCTVVNDYGNDVAEIQL----------------QAKKSVSL-- 531
            :..||.|:|.|:.::......:.|...|.:|:|.|.|.:                ::.:||.|  
  Fly   874 LSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSW 938

  Fly   532 LMTIVGGISVVAFLL-----------VLTILVVVYIKCKKRTKLPPADVISEHQITKNG-GVSCK 584
            .....|...:..:::           :..::|..:....:..||.||...:...:.:|. |.|..
  Fly   939 AQPYDGNSPLDRYIIEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQS 1003

  Fly   585 LE----------PGDRTSNYSDLKVDISGGYVPYGDYSTH--YSPPPQ----------YLTTCST 627
            .|          |..:..|   :||:      |....:..  :.|||:          |:....:
  Fly  1004 SEAVTIITAEEAPSGKPQN---IKVE------PVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLS 1059

  Fly   628 KSNGS------STIMQNNHQNQLQLQQQQQQSHHQHHTQTTTLPMTFLTNSSGGSLTGSIIGSRE 686
            .:|.|      :.|.:...::.|:||..:.      :||.:.:...|           :.||:..
  Fly  1060 NTNSSYVFETINFITEEGKEHNLELQNLRV------YTQYSVVIQAF-----------NKIGAGP 1107

  Fly   687 IRQDNGLPSLQSTTASVVSSSPNGSCSNQSTTAATTTTTHVV------VPSSMALSVDPRYSAIY 745
            :.::.     :..||....|.|      .|.||.||.|:..:      .|...|..|...|..:|
  Fly  1108 LSEEE-----KQFTAEGTPSQP------PSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVY 1161

  Fly   746  745
              Fly  1162  1161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 26/110 (24%)
Ig 42..114 CDD:299845 17/72 (24%)
C2-set_2 135..225 CDD:285423 25/177 (14%)
Ig_3 265..329 CDD:290638 11/77 (14%)
I-set 346..420 CDD:254352 20/87 (23%)
Ig 360..425 CDD:299845 20/78 (26%)
Ig5_KIRREL3-like 428..524 CDD:143235 22/112 (20%)
IG_like 435..524 CDD:214653 21/105 (20%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653 21/89 (24%)
IGc2 361..413 CDD:197706 17/69 (25%)
I-set 433..527 CDD:254352 21/111 (19%)
IGc2 446..517 CDD:197706 16/88 (18%)
I-set 533..618 CDD:254352 9/85 (11%)
IGc2 544..607 CDD:197706 5/62 (8%)
Ig 641..714 CDD:143165 12/72 (17%)
IGc2 735..804 CDD:197706 18/69 (26%)
I-set 819..914 CDD:254352 22/95 (23%)
Ig 833..921 CDD:299845 19/88 (22%)
FN3 918..1011 CDD:238020 13/92 (14%)
FN3 1018..1116 CDD:238020 19/128 (15%)
FN3 1124..1217 CDD:238020 12/44 (27%)
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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