DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and itgb4

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:XP_005166847.1 Gene:itgb4 / 335269 ZFINID:ZDB-GENE-030131-7209 Length:1931 Species:Danio rerio


Alignment Length:831 Identity:159/831 - (19%)
Similarity:275/831 - (33%) Gaps:279/831 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 QNQRF-AMEPQDQTAV-VGARVTLPCRVI-----NKQGTLQWTKDDFGLGTSRDLSGFE-RYAMV 82
            :||.| .||...|||. .|.|:..|..:.     .|...|.|.       .|::.:|:: :|.:.
Zfish  1218 KNQDFQKMEYVTQTATSPGGRLYSPANIKAVATGPKNIRLNWK-------PSQNANGYKVKYWIY 1275

  Fly    83 GSDEEG--------------------DYSLDIYPVMLDDDARY----QCQV---SPGPEGQPA-- 118
            |..|:.                    ||.:.:.......|..|    |||.   .||..|:.|  
Zfish  1276 GDPEDKAKFMDVKTPQAELTNLDPYCDYEMRVCGYNALGDGNYSDIIQCQTLEDIPGEPGRLAFN 1340

  Fly   119 -IRSTFAGLTVLVPPEAPKITQG-DVIY--ATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTDN 179
             |..|...::...|.||..|..| :|||  ..||:|..       |.|.          .|:.||
Zfish  1341 VISPTVTQVSWAEPAEANGIITGYEVIYMPINEDKKPT-------GPPK----------KVMIDN 1388

  Fly   180 IEYTVIPLPDQRRFTAKSVLRLTPKKEHHNTNFSCQAQNTADRT----YRSAKIRVE-------- 232
                    |.:|....::   |.|.:.:      |.....:::.    ||.|.|.:.        
Zfish  1389 --------PKKRMLLIEN---LQPSQTY------CYKVRASNKVGWGPYREATINLASQPTRPMS 1436

  Fly   233 ---------------------VKYAPKVKVNVMGSL-----------------------PGGAGG 253
                                 :.|:.:|..:...||                       |||.||
Zfish  1437 IPIIPDIPIVDAEAGEEYDSYLMYSNEVLRSPTSSLRPSVTDLSDDQFVNGKWEQNFLFPGGGGG 1501

  Fly   254 SVGGAGGGSVHMSTGSRIVEHSQVRLECRADANPS--------DVRYRWFINDEPIIGGQKTEMV 310
            |:      |.::|:.|....||..|.....:::.:        ...:|:.:.|..::   |.:::
Zfish  1502 SL------SRNISSSSTTYSHSTPRTNVTNNSSTTTYISGKGGSTTHRYDVRDGGLL---KEDVI 1557

  Fly   311 IRNVTRKFH--------DAIVKCEVQ----NSVGKSEDSETLDISYAPSFRQRPQSMEADVGSVV 363
            :|..:...|        |:||...:.    :::|.|..|:|...||:.|.|.|.||  .|:...:
Zfish  1558 LRKRSENRHYTEGDGVRDSIVMGNLSGGLLDNLGVSSFSQTTSTSYSLSSRARTQS--EDINDAL 1620

  Fly   364 SLTCEVDSNPQPEIVWIQHPSDRVVGTSTNLTFSVSNETAGRY-----YCKANVPGYAEISADAY 423
               ..:||     ::.....:..|..|.:.|.||....||.:.     :|:::|.||..:    |
Zfish  1621 ---LNLDS-----VLQESRFTPGVPATPSRLVFSALGHTALKVSWQEPHCESDVLGYCVL----Y 1673

  Fly   424 VYLKG---------SPAIGSQRTQYGLVGDTARIECFASSVPRARHVSWTFNGQE----ISSES- 474
            ..:.|         :||..|.     ||.|....:.:...|.......|   |.|    |:.|| 
Zfish  1674 QLINGGDVKRIEVNNPAQNSV-----LVQDLLPNQSYIFKVKAQSREGW---GPEREGVITIESN 1730

  Fly   475 -----------GHDYSILVDAVPGGVKSTLIIRDSQAYHYGKYNCTVVNDYGNDVAEIQLQAKKS 528
                       |..:::...:.||.:..|.:..|:                      :||..:|.
Zfish  1731 VDPKSPLSPVPGSPFTLSTPSAPGPLIFTALRPDT----------------------LQLSWEKP 1773

  Fly   529 VSLLMTIVGGISVVAFLLVLTILVVVYIKCKKRTKLPPADVISEHQITKNGGVSCKLEPGDRTSN 593
            ......|:|.:                :.|:   :|.....:...|:..|...|..:        
Zfish  1774 RKPNGDILGYV----------------VTCE---QLHGGGDLRSFQVNGNAATSLTV-------- 1811

  Fly   594 YSDLKVDISGGYVPYGDYSTHYSPPPQYLTTCSTKSNGSSTIMQNNHQNQLQLQQQQQQSHHQHH 658
             ||||.::...:......:..:.|..:.:.|..::..||.:...:....:.::.....:..|..|
Zfish  1812 -SDLKENMPYKFKVQAQTTQGFGPEREGIITIESQDGGSMSQYSSQSVTKREVFNLPTEITHTSH 1875

  Fly   659 TQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNG--LPSLQSTTASVVSSS 707
            |..:. |..    ||.|.:   ::.||:|.:..|  ...::.....|:|||
Zfish  1876 TMFSE-PFV----SSDGMM---MMSSRQITESGGSMTRQVEMVQRGVMSSS 1918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 27/132 (20%)
Ig 42..114 CDD:299845 20/104 (19%)
C2-set_2 135..225 CDD:285423 18/96 (19%)
Ig_3 265..329 CDD:290638 13/83 (16%)
I-set 346..420 CDD:254352 19/78 (24%)
Ig 360..425 CDD:299845 14/69 (20%)
Ig5_KIRREL3-like 428..524 CDD:143235 20/120 (17%)
IG_like 435..524 CDD:214653 16/104 (15%)
itgb4XP_005166847.1 Integrin_beta 37..457 CDD:278776
EGF_2 <468..490 CDD:285248
EGF_2 545..573 CDD:285248
Integrin_B_tail 625..709 CDD:285239
Calx-beta 991..1064 CDD:295344
FN3 1242..1326 CDD:238020 15/90 (17%)
FN3 1331..1420 CDD:238020 27/122 (22%)
fn3 1640..1720 CDD:278470 20/91 (22%)
fn3 1751..1835 CDD:278470 18/133 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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