DRSC/TRiP Functional Genomics Resources

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Protein Alignment rst and Lrit3

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001274153.1 Gene:Lrit3 / 242235 MGIID:2685267 Length:681 Species:Mus musculus


Alignment Length:320 Identity:73/320 - (22%)
Similarity:116/320 - (36%) Gaps:97/320 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 PSFRQRPQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPSDRVVGTSTNLTF-------------- 396
            ||.......:.:.:||.|.|.|:...:|.|::.|.:  ||   |::.|.|.              
Mouse   254 PSVMMSATKITSALGSNVLLRCDAKGHPTPQLTWTR--SD---GSTVNYTVIQESPGEGIRWSII 313

  Fly   397 ---SVSNETAGRYYCKA-NVPGYAE--------------ISADAYVYLKGSPAIGSQRTQYGLVG 443
               |:|::.||.|.||| |:.|.:|              :|.|:.....|.|.  .|..|.||.|
Mouse   314 SLTSISHKDAGDYRCKAKNLAGISEAVVTVTVVGGVTTTLSPDSSERSPGEPP--EQHPQPGLGG 376

  Fly   444 DTARIECF-------ASSVPRARHVSWTFNGQEISSESGHDYSILVDAVPGGVKSTLIIRDSQAY 501
            .|...:.:       |.|.|......:|.......|.....:|  ..:....|::::..|.::..
Mouse   377 STPPSKSWLSPGLTSAPSYPTPSAALYTSTWSPPPSSLPPIFS--AASATTSVQTSISGRTARTS 439

  Fly   502 HY-------GKYNCTVVNDYGNDVAEIQLQAKKSVSLL---------MTIVG-------GISVVA 543
            |.       ||.|..:..: |.....:....|:.::||         :||..       |:||  
Mouse   440 HQPPLLHPGGKSNAKIEKN-GRKFPPLSASKKEELALLDQAAPMETNVTIKDLRVARETGVSV-- 501

  Fly   544 FLLVLTIL------------VVVYIKC-KKRTKLPPADVISEHQITKNGGVSCKLEPGDR 590
                 |::            .|:|.|. :|...|..||...::|.|.||     ||||.:
Mouse   502 -----TLMWNSSSSTQESSVTVLYSKYGEKDLLLVNADDYGKNQATING-----LEPGSQ 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653
Ig 42..114 CDD:299845
C2-set_2 135..225 CDD:285423
Ig_3 265..329 CDD:290638
I-set 346..420 CDD:254352 26/105 (25%)
Ig 360..425 CDD:299845 26/96 (27%)
Ig5_KIRREL3-like 428..524 CDD:143235 21/109 (19%)
IG_like 435..524 CDD:214653 19/102 (19%)
Lrit3NP_001274153.1 LRR 1. /evidence=ECO:0000255 56..79
LRR_8 61..117 CDD:290566
LRR 2. /evidence=ECO:0000255 80..103
leucine-rich repeat 83..106 CDD:275378
LRR 3. /evidence=ECO:0000255 104..128
LRR_8 105..165 CDD:290566
LRR_4 106..146 CDD:289563
leucine-rich repeat 107..130 CDD:275378
LRR_4 129..170 CDD:289563
LRR 4. /evidence=ECO:0000255 129..151
leucine-rich repeat 131..154 CDD:275378
LRR 5. /evidence=ECO:0000255 152..175
leucine-rich repeat 155..168 CDD:275378
Ig 254..335 CDD:299845 24/85 (28%)
IG_like 263..339 CDD:214653 23/80 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 350..391 10/42 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 425..464 7/39 (18%)
FN3 489..563 CDD:238020 19/75 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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