DRSC/TRiP Functional Genomics Resources

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Protein Alignment rst and Ptprq

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus


Alignment Length:531 Identity:96/531 - (18%)
Similarity:177/531 - (33%) Gaps:177/531 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 VEHSQVRLECRADANPSDVRYRWFINDEPIIGGQKTEMVIRNVTRKFHDAIVK----CEVQNSVG 332
            ||.:::|:..|....|:.:..::.:....:..|    :::.|......|..:.    .|:.|.|.
Mouse   409 VEATEIRVSWRKPRQPNGIISQYRVKVSVLESG----VILENTLLTGQDEYINNPMTPEIMNLVD 469

  Fly   333 KSEDSETLDISYAP--SFRQRPQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPSD---------- 385
                         |  .|.:....|.:|:.|:.|            .::..||.|          
Mouse   470 -------------PMIGFYEGSGEMSSDLHSLAS------------FIYNSHPHDFPARTRVEDQ 509

  Fly   386 ---RVVGTSTNLTFSVSNETAGRYYCKANVPGYAE--ISADAYVYL-KGSPAIGSQRTQYGLVGD 444
               .||.|.......::.|... |..:..|| :.|  ||..|:..: :|.|.:.:.||:      
Mouse   510 RSPVVVATRNQYMTDIAAEHLS-YVIRRLVP-FTEHTISVSAFTVMGEGPPTVLTVRTR------ 566

  Fly   445 TARIECFASSVPRARHVSWTFNGQEISSESGHDYSILVDAVPGGVKSTLIIRDSQAYHYGKYNCT 509
                    ..||.:..:   .|.:.|||                 .|.|:..|...|..||    
Mouse   567 --------EQVPSSIQI---INYKNISS-----------------SSILLYWDPPEYPNGK---- 599

  Fly   510 VVNDYGNDVAEIQLQAKKSVSLLMTIVGGISVVAFLLVLTILVVVYIKCKKRTKLPPADVISEHQ 574
             :..|  .:..::|...::..  ||.|....::..|...|         :.:.::..:..:.|..
Mouse   600 -ITHY--TIYAMELDTNRAFQ--MTTVDNSFLITGLKKYT---------RYKMRVAASTHVGESS 650

  Fly   575 ITKNGGVSCKLEPGDRTSNYSDLKV-DISGGYVPYGDYSTHYSPPPQYLTTCSTKSNGSSTIMQN 638
            :::...:..:....:..|:..|:|| |:|.     .:.|..:|||        .|.||.....:.
Mouse   651 LSEENDLFVRTPEDEPESSPQDVKVTDVSP-----SELSLTWSPP--------EKPNGIIIAYEV 702

  Fly   639 NHQNQLQLQQQQQQSHHQHHTQTTTLPMTFL-------------TNSSGGSLTGSIIGSREIRQD 690
            .:||...|        ...:|.||.:.::.|             |....|:.:.|::   .:|..
Mouse   703 FYQNADAL--------FVKNTSTTNITLSDLKPYTLYNISIQSYTRLGHGNQSSSLL---SVRTS 756

  Fly   691 NGLP--SLQSTTASVVSS-----------SPNG-----------SCSNQSTTAATTTT------- 724
            ..:|  :.::.|...:||           ||||           |.|:::.|..||:.       
Mouse   757 ETVPDSAPENITYKNISSEEIEIFFLPPRSPNGIIQKYTIYLKRSNSHEARTIETTSLTLTIGGL 821

  Fly   725 ---THVVVPSS 732
               ||.|:..|
Mouse   822 KKYTHYVIEVS 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653
Ig 42..114 CDD:299845
C2-set_2 135..225 CDD:285423
Ig_3 265..329 CDD:290638 9/60 (15%)
I-set 346..420 CDD:254352 18/90 (20%)
Ig 360..425 CDD:299845 16/79 (20%)
Ig5_KIRREL3-like 428..524 CDD:143235 17/95 (18%)
IG_like 435..524 CDD:214653 15/88 (17%)
PtprqNP_001357916.1 FN3 57..151 CDD:238020
FN3 308..393 CDD:238020
fn3 399..>441 CDD:365830 5/31 (16%)
FN3 570..654 CDD:238020 19/121 (16%)
fn3 668..744 CDD:365830 21/96 (22%)
FN3 762..850 CDD:238020 16/71 (23%)
fn3 857..934 CDD:365830
FN3 951..1049 CDD:238020
FN3 1056..1137 CDD:238020
FN3 1152..1233 CDD:238020
FN3 1247..1337 CDD:238020
FN3 1342..1421 CDD:238020
FN3 1432..1535 CDD:238020
FN3 1542..1638 CDD:238020
FN3 1645..1734 CDD:238020
UP_III_II 1759..1928 CDD:297589
R-PTPc-Q 2033..2256 CDD:350464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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