DRSC/TRiP Functional Genomics Resources

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Protein Alignment rst and DSCAM

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001380.2 Gene:DSCAM / 1826 HGNCID:3039 Length:2012 Species:Homo sapiens


Alignment Length:792 Identity:162/792 - (20%)
Similarity:250/792 - (31%) Gaps:283/792 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TAVVGARVTLPCRVIN-KQGTLQWTKDDFGLGTSRDLSGFERYAMVGSDEEGDYSL-DIYPVMLD 100
            ||:.|....:.||||. ...:::|.|:.       :|..| .:..|..:..|...| |:...:  
Human   514 TAIAGRDTYIHCRVIGYPYYSIKWYKNS-------NLLPF-NHRQVAFENNGTLKLSDVQKEV-- 568

  Fly   101 DDARYQCQVSPGPEGQPAIRSTFAGLTVLVPP-----EAPKITQGDVIYATEDRKVEIECVSVGG 160
            |:..|.|.|...|:   ...|....:||.|||     |.|:.:.|        ::|.|.||.|.|
Human   569 DEGEYTCNVLVQPQ---LSTSQSVHVTVKVPPFIQPFEFPRFSIG--------QRVFIPCVVVSG 622

  Fly   161 KPAAEITW------IDGLGNVLTDNIEYTVIPLPDQRRFTAKSVLRLTPKKEHHNTNFSCQAQNT 219
            .....|||      |.|...|..|||::|             |.||::.....||.|::|.|:|.
Human   623 DLPITITWQKDGRPIPGSLGVTIDNIDFT-------------SSLRISNLSLMHNGNYTCIARNE 674

  Fly   220 ADRTYRSAKIRVEVKYAPKVKVNVMGSLPGGAGGSVGGAGGGSVHMSTGSRIVEHSQVRLECRAD 284
            |                                                 ..|||          
Human   675 A-------------------------------------------------AAVEH---------- 680

  Fly   285 ANPSDVRYRWFINDEPIIGGQKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDSETLDISYAPSFR 349
                                 ::::::|                               ..|.|.
Human   681 ---------------------QSQLIVR-------------------------------VPPKFV 693

  Fly   350 QRPQSMEADVGSVVSLTCEVDSNPQPEIVW-------------------IQHPSDRVVGTSTNLT 395
            .:|:..:...|..|.|.|..:..|.|.|||                   ||     |:...:.|.
Human   694 VQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQ-----VLSNGSLLI 753

  Fly   396 FSVSNETAGRYYCKANVPGYAEISADAYVYLKGSPAIGS-QRTQYGLVGDTARIECFASSVPRAR 459
            ..|..|.:|.|.||.:....|::|...|:.:|....|.| ..|.....|....:.|.|.. .:..
Human   754 KHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIPAMITSYPNTTLATQGQKKEMSCTAHG-EKPI 817

  Fly   460 HVSWTFNGQEISSESGHDYSILVDAVPGGVKSTLIIRDSQAYHYGKYNCTVVNDYGNDVAEIQLQ 524
            .|.|....:.|:.|... |.:....|...|.|||.|..:.....|.::|..:|.||.|...|||.
Human   818 IVRWEKEDRIINPEMAR-YLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 881

  Fly   525 AK---------------KSVSLLMTI--VGGISVVAFLLVLTILVVVYIKCKKRTKLPPADVISE 572
            .:               ::::|..|:  .|...:..:          .|:||.:     :|....
Human   882 VQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGY----------DIECKNK-----SDSWDS 931

  Fly   573 HQITKNGGVSCKLEPGDRTSNYSDLKVDISGGYVPYGDYSTHYSPPPQYLTTCSTKSNGSSTIMQ 637
            .|.||:  ||.:|.        |...:||            |.|      :|.|.:....:.|.:
Human   932 AQRTKD--VSPQLN--------SATIIDI------------HPS------STYSIRMYAKNRIGK 968

  Fly   638 NNHQNQLQLQQQQ-------QQSH-----HQHHTQTTTLPMTFLTN-------------SSGGSL 677
            :...|:|.:...:       |:.|     .|....|...|...|.|             |:||:.
Human   969 SEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNF 1033

  Fly   678 TGSII-----GSREIRQDNGLPSLQSTTASVVSSSPNGSCSNQSTTAATTTTTHVVVPS-----S 732
            ..:||     |..|:...:.|...  |...:|..:.|.:.:..|:....|||.. .|||     .
Human  1034 QFNIISVDTSGDSEVYTLDNLNKF--TQYGLVVQACNRAGTGPSSQEIITTTLE-DVPSYPPENV 1095

  Fly   733 MALSVDPRYSAI 744
            .|::..|...:|
Human  1096 QAIATSPESISI 1107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 23/93 (25%)
Ig 42..114 CDD:299845 17/73 (23%)
C2-set_2 135..225 CDD:285423 28/95 (29%)
Ig_3 265..329 CDD:290638 4/63 (6%)
I-set 346..420 CDD:254352 23/92 (25%)
Ig 360..425 CDD:299845 22/83 (27%)
Ig5_KIRREL3-like 428..524 CDD:143235 25/96 (26%)
IG_like 435..524 CDD:214653 23/88 (26%)
DSCAMNP_001380.2 Ig 45..113 CDD:319273
I-set 235..310 CDD:254352
I-set 315..385 CDD:333254
Ig_3 407..488 CDD:316449
IGc2 518..575 CDD:197706 15/66 (23%)
I-set 596..686 CDD:333254 34/190 (18%)
Ig_DSCAM 707..784 CDD:143211 21/81 (26%)
Ig 802..889 CDD:325142 23/88 (26%)
FN3 885..978 CDD:238020 23/135 (17%)
FN3 986..1083 CDD:238020 20/98 (20%)
FN3 1091..1184 CDD:238020 3/17 (18%)
FN3 1189..1278 CDD:238020
Ig 1303..1369 CDD:319273
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
Required for netrin-mediated axon repulsion of neuronal growth cones. /evidence=ECO:0000250|UniProtKB:Q9ERC8 1617..2012
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1718..1810
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1855..1883
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1971..2012
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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