DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and igcm-2

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001362087.1 Gene:igcm-2 / 180913 WormBaseID:WBGene00020130 Length:802 Species:Caenorhabditis elegans


Alignment Length:516 Identity:116/516 - (22%)
Similarity:187/516 - (36%) Gaps:134/516 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 GARVTLPCRV--INKQG-TLQWTKDDFGLGTSRDLSGFERYAMVGSDE-------------EGDY 90
            ||.:||||.:  .|::. :|.|.||.     ...||.|      |.::             :|..
 Worm    28 GAPITLPCSISLFNEESFSLDWRKDG-----QLILSAF------GQEQGHVTPTLQGRLARDGFL 81

  Fly    91 SLDIYPVMLDDDARYQCQVSPGPEGQPA--IRSTFAGLTVLVPPEAPKITQGDVIYATEDRKVEI 153
            .:.|:.|...|...|||.|:...: ||.  .:...|.|.|.|||.....::..:|:......:..
 Worm    82 GITIHSVTDGDAGVYQCIVT
KFSK-QPTRPEKGLSAKLVVNVPPVIISPSKNAIIHKKVGADLIF 145

  Fly   154 ECVSVGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDQRRFTAKSVLRLTPKKEHHNTNFSCQAQN 218
            || ...|.|:.||||                  ..:::..:...||.|:..:|.....::|.|.|
 Worm   146 EC-KAEGAPSPEITW------------------SRNEQIISTSPVLTLSNLEEGDKGLYTCLAVN 191

  Fly   219 TADRTYRSAKIRVEVKYAPKVKVNVMGSLPGGAGGSVGGAGGGSVHMSTGSRIVEHSQVRLECRA 283
            ....:..|..:|.       .|..::..:|                  ....::|.|.|...|.|
 Worm   192 IEGNSTSSI
DVRF-------TKATILDLIP------------------LNKTVIEGSNVFWHCHA 231

  Fly   284 DANPSDVRYRWFINDEPIIGGQKTEMVIR-NV---------TRKFHDAIVKCEVQNSVGKSEDSE 338
            :|..:.:.|.|....:||   :.|.:.:| |:         .||.......||.:||.|::..|.
 Worm   232 NAQATAISYSWLFEKKPI---KTTSLGLRSNIRSGDLSLQDVRKSDSGWYTCEAKNSAGETTSST 293

  Fly   339 T-LDISYAPSFRQRPQSMEADVGSVVS-----LTCEVDSNPQP-EIVWIQHPSDRVVGTSTNLTF 396
            . |.:.|.|    .|.|....|.:|.|     ::|:|.:||.| ...|.::........|:::..
 Worm   294 AYLHVFYPP----EPLSSHQPVQTVASGRNTTVSCDVIANPTPTSYTWSKNGHYLPTQASSHIII 354

  Fly   397 SVSNE-TAGRYYCKA-NVPGYAE------ISADAYVYLKGSPAIGSQRTQYGLVGDTARIEC--F 451
            |.:.. ..|.|.|:| |:.|...      |.|:..|:....|:....|     :||...|.|  |
 Worm   355 SYAKPGDGGIYGCQADNIAGKGSIVETHLIVAEPPVFTVAPPSEIKVR-----LGDQVSIPCQGF 414

  Fly   452 ASSVPRARHVSWTFNGQEISSESGHDYSILVDAVPGGVKSTLIIRDSQAYHYGKYNCTVVN 512
            ...:|   .|.|..:.:.|:                  :|||..:..:...:|.|.|.|.|
 Worm   415 GDPMP---IVYWIRDKKRIN------------------QSTLTFKKVEHLDHGAYECVVAN 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 28/105 (27%)
Ig 42..114 CDD:299845 23/87 (26%)
C2-set_2 135..225 CDD:285423 16/89 (18%)
Ig_3 265..329 CDD:290638 17/73 (23%)
I-set 346..420 CDD:254352 21/87 (24%)
Ig 360..425 CDD:299845 18/78 (23%)
Ig5_KIRREL3-like 428..524 CDD:143235 19/87 (22%)
IG_like 435..524 CDD:214653 18/80 (23%)
igcm-2NP_001362087.1 IG_like 23..101 CDD:214653 22/83 (27%)
Ig 124..200 CDD:386229 17/94 (18%)
IG_like 214..298 CDD:214653 23/104 (22%)
Ig_3 309..371 CDD:372822 15/61 (25%)
Ig 389..467 CDD:386229 20/92 (22%)
FN3 476..548 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141865at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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