DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and syg-1

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001123159.1 Gene:syg-1 / 180555 WormBaseID:WBGene00006365 Length:730 Species:Caenorhabditis elegans


Alignment Length:811 Identity:201/811 - (24%)
Similarity:313/811 - (38%) Gaps:173/811 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TMQLLLLATIVGMVRSSPYTSYQ-NQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGL 67
            |..||||..:|        |..| .||....|:|..|.||....|.|||.::||.:||.||||||
 Worm     6 TWPLLLLFQLV--------TCQQLQQRIVEAPKDTLAAVGETAILTCRVEHQQGPVQWMKDDFGL 62

  Fly    68 GTSRD--LSGFERYAMVGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLV 130
            ||.||  |.|.:||.||||...|:|:|:|..|.|.||..:.||:|.....: |:.|:.|.|||||
 Worm    63 GTDRDKPLPGNKRYRMVGSAANGEYNLEISNVTLFDDDDFACQISESDHAK-AVVSSKAKLTVLV 126

  Fly   131 PPEAPKITQ---------GDVIYATEDRKVEIECVSVGGKPAAEITW-----------IDGLG-- 173
            .|..|||.:         ||.|..:        |:|..|||...|.|           :..||  
 Worm   127 RPTPPKIVKSHHSLKAIAGDPITQS--------CLSRKGKPPPTIGWAIASDEHGKHIVSWLGES 183

  Fly   174 ----------------NVLTDNIEYTVI------PLPDQRRFTAKSVLRLTPKKEHHNTNFSCQA 216
                            .|:....|.|.:      ...|...::..|.|...|:.|..:....|.:
 Worm   184 RSKFGGIHAKPEISQETVIAHVNETTQVEEGGNNSREDSSIYSIMSNLSFIPRPEDDHKYLICIS 248

  Fly   217 QN-TADRTYRSAKIRVEVKYAPKVKVNVMGSLPGGAGGSVGGAGGGSVHMSTGSRIVEHSQVRLE 280
            |: |.........:::.::|||::.:.|...||                      :.|:....|.
 Worm   249 QHMTFPNKIEVDSVKLSLRYAPQINLTVASKLP----------------------LRENGSALLA 291

  Fly   281 CRADANPSD-VRYRWFINDEPIIGGQKTE-----MVIRNVTRKFHDAIVKCEVQNSVGKSEDSET 339
            |..:|.|.| |:..|:      .|.||..     :....:..:.|:..:.||..|.:|.:..|..
 Worm   292 CNVNAKPLDNVKISWY------KGNQKLRETGDTLTFETLKMEDHNRDIFCEATNEIGTTRGSIK 350

  Fly   340 LDISYAPSFRQRPQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPSDRVVGTSTNLTF-SVSNETA 403
            |::::........|..|.:.|......|...:||.|.|.|.:..||.::|...|||. :|.....
 Worm   351 LNVAFGARIMSTSQDKEVNEGDNAFFHCATLANPAPAIFWTRGDSDEIIGHGENLTLENVRTWQQ 415

  Fly   404 GRYYCKANVPGYAEISADAYVYLKGSPAIGSQRTQYGLVGDTARIECFASSVPRARHVSWTFNGQ 468
            |.|.|.|.|.|:.:.....|::::|.|.:..:......:.:...|.|..|..|:..:|.||.||:
 Worm   416 GNYNCTATVEGFRKQILSHYLHIRGPPTVSMKDEVSASLDEATEIICEISGRPKTNNVRWTVNGK 480

  Fly   469 EISSESG----HDYSILVDAVPGGVKSTLIIRDSQAYHYGKYNCTVVNDYGNDVAEIQLQAKKSV 529
            ||:..:|    |.|     ..|.|.:|.|.|:|.:...:|.|||:..|..|.|.....|:.:..:
 Worm   481 EINFNNGRITVHQY-----PKPYGKESILKIKDLKEEDFGVYNCSANNGLGFDNRGTLLKKRNIL 540

  Fly   530 SLLMTIVGGISVVAFLLVLTILVVVYIKCKKRTKLPPADVISEHQITKNGGVSCKLEPGDRTSNY 594
            ..::.......:||..::...:::|.:.|..                    ..|:.....|.|.:
 Worm   541 DWIVITAKFDRMVALAIISAGVLLVSLLCCL--------------------CMCRSNCRSRKSKF 585

  Fly   595 SDLKVDIS-------GGYVPYGDYSTHYSPPPQYLTTCSTKSNGSSTIMQNNHQNQL-------- 644
            .|.:.|::       |.|.|     ..||..|......|||...|  |.|||.....        
 Worm   586 IDDQSDVTVKCEALDGQYFP-----EMYSSSPVDNVHLSTKDYIS--IPQNNPDLDFLGATGSFG 643

  Fly   645 -----------QLQQQQQQSHHQHHTQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNGLPSLQS 698
                       ....:...:.::|         ::.:..||.|..|.:.....:...:.||.:::
 Worm   644 PPGGLYPKCFNNSANEYIYNRYEH---------SYGSFGSGLSTPGGVSDMYGVAMSDKLPVMET 699

  Fly   699 --TTASVVSSSPNGSCSNQSTTAATTTTTHV 727
              ...:..:|:.|...|.:.....:.|:|||
 Worm   700 LQEVETPKTSNYNFLSSPEVVRPISRTSTHV 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 48/97 (49%)
Ig 42..114 CDD:299845 38/73 (52%)
C2-set_2 135..225 CDD:285423 26/134 (19%)
Ig_3 265..329 CDD:290638 14/69 (20%)
I-set 346..420 CDD:254352 22/74 (30%)
Ig 360..425 CDD:299845 21/65 (32%)
Ig5_KIRREL3-like 428..524 CDD:143235 29/99 (29%)
IG_like 435..524 CDD:214653 27/92 (29%)
syg-1NP_001123159.1 I-set 24..124 CDD:254352 47/100 (47%)
Ig 30..124 CDD:299845 45/94 (48%)
Ig <151..265 CDD:299845 20/121 (17%)
Ig_2 276..353 CDD:290606 21/104 (20%)
IG_like 283..353 CDD:214653 18/75 (24%)
IG_like 363..427 CDD:214653 21/63 (33%)
Ig_2 368..438 CDD:290606 21/69 (30%)
Ig 440..528 CDD:299845 28/92 (30%)
IG_like 450..535 CDD:214653 27/89 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163995
Domainoid 1 1.000 83 1.000 Domainoid score I5340
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 203 1.000 Inparanoid score I2452
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28584
OrthoDB 1 1.010 - - D141865at33208
OrthoFinder 1 1.000 - - FOG0001084
OrthoInspector 1 1.000 - - otm14417
orthoMCL 1 0.900 - - OOG6_103358
Panther 1 1.100 - - O PTHR11640
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.910

Return to query results.
Submit another query.