DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rst and lad-2

DIOPT Version :9

Sequence 1:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster
Sequence 2:NP_001023496.1 Gene:lad-2 / 177078 WormBaseID:WBGene00002243 Length:1187 Species:Caenorhabditis elegans


Alignment Length:665 Identity:131/665 - (19%)
Similarity:219/665 - (32%) Gaps:230/665 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VRSSPYTSYQNQRFAMEPQDQTAVVGARVTLPCRVINKQ-GTLQWTKDDFGLGTSR--DLSGFER 78
            :..|...|:..::.::.|.:.|...|.::.|.|....:. .|:.|:|.|..|..||  ||     
 Worm   227 IEPSQDKSHPVKKMSVSPSEVTVRAGGQLKLQCIFGGRPLPTIFWSKIDGELPKSRIKDL----- 286

  Fly    79 YAMVGSDEEGDY--SLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLVPP----EAPKI 137
                 :..|.|:  ||.:..|..||...|:|:      |:..:.:  ..:.|:..|    :.|: 
 Worm   287 -----TSHESDFGRSLIVENVHPDDAGAYECR------GRHLVHT--VNVRVMAAPFWEFDPPR- 337

  Fly   138 TQGDVIYATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDQRRFTAKSVLRLT 202
                .|...|:...|:||:: ||:|...|||... |..|.:..|       |.||........|.
 Worm   338 ----DISLPEESTGELECLA-GGQPTPIITWSMN-GKFLHELAE-------DSRRVLLDHGRILR 389

  Fly   203 PKKEHHNTN---FSCQAQNTADRTYRSAKIRVEVKYAPKVKVNVMGSLPGGAGGSVGGAGGGSVH 264
            .:..:|:.:   :.|.|.|.....:.:|.:.|.. :||..:      :|...            |
 Worm   390 VRNLNHDLDTGVYQCNASNPLGYVFANAFVHVRA-HAPFFR------MPAAR------------H 435

  Fly   265 MSTGSRIVEHSQVRLECRADANPSDVRYRWF-INDEPIIGGQKTEMVIRNVTRKFHD------AI 322
            .    ::|.||.|.|:|..||.| :...||. .:|.|:...:....:..|.|...:|      .:
 Worm   436 W----KVVLHSTVVLDCDVDAAP-EAMVRWVDADDRPLQVVEGKNKLFPNHTFMVYDVNSADEGL 495

  Fly   323 VKCEVQNSVGKSEDSETLDISYAPSFRQR---PQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPS 384
            ..|.|.|..|.:..:..|.: :.|::..|   |:.:..:.|....:.||..::|:..|       
 Worm   496 YYCNVSNKYGINRATNRLQV-FKPTYFVRIPTPKRLILEAGETAEVFCEAVADPRLPI------- 552

  Fly   385 DRVVGTSTNLTFSVSNETAGRYYCKANVPGYAEISADAYVYLKGSPAIGSQRTQYGLVGDTARIE 449
                                ||                                           
 Worm   553 --------------------RY------------------------------------------- 554

  Fly   450 CFASSVPRARHVSWTFNGQEISSESGHDYSILVDAVPGGVKSTLIIRDSQAYHYGKYNCTVVNDY 514
                        .||.|| ::.:||.: |.||.|        .|..|..:..|.|..:|..:.|.
 Worm   555 ------------QWTING-KVLTESQY-YEILPD--------RLRFRSVRGRHSGIIDCAAITDV 597

  Fly   515 GNDVAEIQL-----------------QAKKSVSLLMTIVGGISVVAFLLVLTILVVVYIKCKKRT 562
            ...:|.:||                 :.|.:|..:.....|.|:..:      :|.::...||. 
 Worm   598 DVKLASMQLIVKDVPAHPVVETAHCSERKATVKWVAASDHGDSIKKY------IVEMFTDFKKN- 655

  Fly   563 KLPPADVISEH-QITKNG-GVSCKLEPGDRTSNY------------SDLKVDISGGYVPYGDYST 613
               ..:||:|. .:.|.. .|...|.|   ..||            ||:|:|             
 Worm   656 ---EWEVINEEVNVNKETFEVDITLTP---WVNYTFRVVAVNSHGRSDMKID------------- 701

  Fly   614 HYSPPPQYLTTCSTK 628
              ..|.:...||.|:
 Worm   702 --GQPKEDWLTCQTR 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rstNP_001284835.1 IG_like 34..130 CDD:214653 25/100 (25%)
Ig 42..114 CDD:299845 21/76 (28%)
C2-set_2 135..225 CDD:285423 23/92 (25%)
Ig_3 265..329 CDD:290638 18/70 (26%)
I-set 346..420 CDD:254352 10/76 (13%)
Ig 360..425 CDD:299845 7/64 (11%)
Ig5_KIRREL3-like 428..524 CDD:143235 19/112 (17%)
IG_like 435..524 CDD:214653 19/105 (18%)
lad-2NP_001023496.1 IG_like 48..116 CDD:214653
Ig 49..121 CDD:299845
Ig 124..214 CDD:299845
IG_like 244..325 CDD:214653 24/98 (24%)
Ig 255..325 CDD:299845 21/87 (24%)
I-set 335..421 CDD:254352 24/99 (24%)
Ig4_L1-NrCAM_like 344..422 CDD:143179 21/86 (24%)
IG_like 438..515 CDD:214653 21/77 (27%)
Ig 443..516 CDD:299845 18/74 (24%)
IG_like 527..608 CDD:214653 27/172 (16%)
Ig 535..>593 CDD:299845 22/149 (15%)
FN3 610..697 CDD:238020 16/99 (16%)
FN3 721..804 CDD:238020
fn3 823..909 CDD:278470
FN3 921..1010 CDD:238020
FN3 1016..1108 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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