DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment w and PEN3

DIOPT Version :9

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_176196.1 Gene:PEN3 / 842281 AraportID:AT1G59870 Length:1469 Species:Arabidopsis thaliana


Alignment Length:658 Identity:192/658 - (29%)
Similarity:309/658 - (46%) Gaps:88/658 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QEDQELLIRGGSKHPSAEHLNNGDS--------GAASQSCINQGFGQAKN-YGTLRPPSPPEDSG 58
            :|:.|...:|  |.|....|:..|.        |..|:....:..|.|.| .|.:.|.:|     
plant   807 EEENEDADQG--KDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTP----- 864

  Fly    59 SGSGQLAENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHIPAPRKHLLKNVCGVAYPG 123
                     |..::.::..|  |:.||....|.|..|             |..|||.|.|...||
plant   865 ---------LAMSFDDVKYF--VDMPGEMRDQGVTET-------------RLQLLKGVTGAFRPG 905

  Fly   124 ELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCA-YVQQDDLFIGS 187
            .|.|:||.||||||||::.||.|...|.   ..|...::|.| ..:|..||.: |.:|.|:....
plant   906 VLTALMGVSGAGKTTLMDVLAGRKTGGY---IEGDVRISGFP-KVQETFARISGYCEQTDIHSPQ 966

  Fly   188 LTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFA 252
            :|.||.|||.|.:|:|:.:...:::..||||::.:.|...:.:|:|:|| |.|||..:||||..|
plant   967 VTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPG-VTGLSTEQRKRLTIA 1030

  Fly   253 SEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAE- 316
            .|.:.:|.::..||||||||:..|..|::.::.....|:||:.||||||.::||.||:::||.. 
plant  1031 VELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRG 1095

  Fly   317 GRVAFLG----TPSEAVDFF-SYVG-AQCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFA 375
            |:|.:.|    ...:.|::| |:.| ::.|..||||.:.::..::  ..|::.....|::.:..|
plant  1096 GQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSL--AAELKLSVDFAELYNQSA 1158

  Fly   376 ISKVARDMEQLLATKNLEKPLEQPENGYT--YKATWFM-----QFRAVLWRSWLSVLKEPLLVKV 433
            :.:         ..|.|.|.|..|..|.:  |.||.|.     ||::.||:.|.:..:.|....|
plant  1159 LHQ---------RNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLV 1214

  Fly   434 RLIQTTMVAILIGLIF--LGQQLTQVGVMN-INGAIFLFLTNMTFQNVFATINVFTSELPVFMRE 495
            |.|.|...::|||.:|  :|...:..|.:. :.||::..:..:...|......:...|..||.||
plant  1215 RFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRE 1279

  Fly   496 ARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVS---- 556
            ..:.:|....|.:.:...|||..|...:.::.|.|.|:|.......||    ....|:..|    
plant  1280 RAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFF----WFVFVSYFSFLYW 1340

  Fly   557 TSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVP---VYLKWLSYLSWFRYANEGLL 618
            |.:|.:....:.:..:|..........|.||.|||:....:|   ::..|:..::|..|   ||:
plant  1341 TYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVY---GLI 1402

  Fly   619 INQWADVE 626
            ::|:.|||
plant  1403 VSQYGDVE 1410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 177/584 (30%)
PEN3NP_176196.1 PLN03140 31..1469 CDD:215599 192/658 (29%)
ABC_trans_N 89..165 CDD:291196
ABCG_PDR_domain1 154..426 CDD:213200
ABC2_membrane 527..733 CDD:279410
PDR_assoc 740..800 CDD:285559
ABCG_PDR_domain2 864..1102 CDD:213199 98/271 (36%)
ABC2_membrane 1197..1404 CDD:279410 51/213 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.870

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