DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment w and ABCG12

DIOPT Version :10

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_175561.1 Gene:ABCG12 / 841575 AraportID:AT1G51500 Length:687 Species:Arabidopsis thaliana


Alignment Length:686 Identity:196/686 - (28%)
Similarity:331/686 - (48%) Gaps:112/686 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RPPSPPEDSGSGSGQLAENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHIPAPRKHLL 113
            |.|.||.:.|.|:....|:||....|.          ||                   .|.:.||
plant    10 RRPPPPAEIGRGAYLAWEDLTVVIPNF----------SG-------------------GPTRRLL 45

  Fly   114 KNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYV 178
            ..:.|.|.||.::|:||.||:||:|||::||.|..:.:.:  :|..||||:  .|:......|||
plant    46 DGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIM--TGNLLLNGK--KARLDYGLVAYV 106

  Fly   179 QQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSG 243
            .|:|:.:|:||.||.:.:.|.:|:...||..:....|:..|.||.|..|...:|| ....:|:||
plant   107 TQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIG-NWHSRGVSG 170

  Fly   244 GERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQK-GKTVILTIHQPSSELFEL 307
            |||||::.|.|.||.|.:|..|||||||||.:|..|:|.|:.:::. |:||:.:|||||||:|.|
plant   171 GERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFAL 235

  Fly   308 FDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQ--------VLAVVPGRE---- 360
            ||.:.|::.|...:.|....||:||:..|..||...||:|.:::        |.|.:.|.:    
plant   236 FDDLFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRE 300

  Fly   361 ----------IESRDRIAKICDNF---AISKVARDMEQLLATKNLEKPLEQPENGYTYKATWFMQ 412
                      :.:.:..|::.:|:   ..:|.|:...:.||:......:|..:..   :||||.|
plant   301 TPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGS---EATWFKQ 362

  Fly   413 FRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIF--LGQQLTQV-GVMNINGAIFLFLTN-M 473
            .|.:..||::::.::......|::...:|:..:|.||  :|...|.: ..::..|    |:|. |
plant   363 LRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGG----FITGFM 423

  Fly   474 TFQNV--FATINVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLR 536
            ||.::  |.:   |..|:.||.:|..|..|....|.:...::..|..:.:.|:..:|.|.|:..|
plant   424 TFMSIGGFPS---FIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFR 485

  Fly   537 AGVLHF-FNCL----------ALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGF 590
            .||.|: |.||          :|:.:||::..:|           .|.|..|..:|...::..||
plant   486 PGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNF-----------LMGLITGAGIIGIIMMTSGF 539

  Fly   591 FLNSGSVP-VYLKW-LSYLSWFRYANEGLLINQWADVE-----PGEISCTSSNTTCPSSGKVILE 648
            |.....:| |:.:: :|::|:..:|.:|...|.:..:|     .||...|.........|..:..
plant   540 FRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTH 604

  Fly   649 TLNFSAADLPLDYVGLAILIVSFRVLAYLALRLRAR 684
            :..:       |...:.:::|.:|:|.::.|:|:.|
plant   605 SKWW-------DLSAIVLILVCYRILFFIVLKLKER 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 189/667 (28%)
ABCG12NP_175561.1 3a01204 40..635 CDD:273361 184/627 (29%)

Return to query results.
Submit another query.