DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment w and ABCG35

DIOPT Version :9

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_172973.1 Gene:ABCG35 / 838087 AraportID:AT1G15210 Length:1442 Species:Arabidopsis thaliana


Alignment Length:636 Identity:183/636 - (28%)
Similarity:287/636 - (45%) Gaps:132/636 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 ERHIPAPRKHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQG-----IQVSPSGMRLL 161
            |:.:...|..|||.|.....||.|.|:||.||||||||::.||.|...|     ::||       
plant   857 EQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVS------- 914

  Fly   162 NGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSK 226
             |.|...:.......|.:|.|:....:|.||.|||.|.:|:.:.::...::..||||::.:.|..
plant   915 -GFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVD 978

  Fly   227 CQHTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGK 291
            .:..|:|:|| |.|||..:||||..|.|.:.:|.::..||||||||:..|..|::.::.....|:
plant   979 LRDAIVGLPG-VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 1042

  Fly   292 TVILTIHQPSSELFELFDKILLMAE-GRVAFLG----TPSEAVDFF-SYVGA-QCPTNYNPADFY 349
            ||:.||||||.::||.||::|||.. |.|.:.|    ...:.|::| |:.|. :.|..||||.:.
plant  1043 TVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWM 1107

  Fly   350 VQVLAVVP----GREIESRDRIAKICDNFAISKVARDMEQLLATKNLEKPLEQPENGYT--YKAT 408
            ::..::..    |.:.....:.:.:|..               .|.|.:.|..|..|.|  |.||
plant  1108 LEASSLAAELKLGVDFAELYKASALCQR---------------NKALVQELSVPPQGATDLYFAT 1157

  Fly   409 WFM-----QFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIF--LG------QQLTQVGVM 460
            .|.     ||::.||:.|.:..:.|....||.|.|...:::||.:|  :|      |.||.|   
plant  1158 QFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMV--- 1219

  Fly   461 NINGAIFLFLTNMTFQNVFATINVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVF 525
              .|||:..:..:...|......:...|..||.||..:.:|....|.:.:...|||..|.....:
plant  1220 --IGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYY 1282

  Fly   526 TAIAYPMIGL--RAG------VLHFFNCL-----ALVTL-------VANVSTSFGYLISCASSST 570
            :.|.|.|:|.  :|.      .:::|:.|     .::|:       ||::..|..|.|       
plant  1283 SLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGI------- 1340

  Fly   571 SMALSVGPPVIIPFLLFGGFFLNSGSVP---VYLKWLSYLSWFRYANEGLLINQWADVE------ 626
                         |.||.|||:....:|   |:..|:..::|..|   ||:.:|:.|||      
plant  1341 -------------FNLFSGFFIPRPKIPKWWVWYYWICPVAWTIY---GLITSQYGDVETPIALL 1389

  Fly   627 ---PGEISCTSSNTTCPSSGKVILETLNFSAADLPLDYVG-LAILIVSFRV 673
               ||           .:..:.|.:...|.:     ||:| :|.::|.|.|
plant  1390 GGAPG-----------LTVKQYIKDQYGFES-----DYMGPVAGVLVGFTV 1424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 183/636 (29%)
ABCG35NP_172973.1 PLN03140 8..1442 CDD:215599 183/636 (29%)
ABC_trans_N 88..163 CDD:291196
ABCG_PDR_domain1 182..424 CDD:213200
ABC2_membrane 525..731 CDD:279410
PDR_assoc 738..802 CDD:285559
ABCG_PDR_domain2 837..1075 CDD:213199 87/226 (38%)
ABC2_membrane 1170..1375 CDD:279410 56/232 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.870

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