DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment w and ABCG29

DIOPT Version :9

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_566543.1 Gene:ABCG29 / 820881 AraportID:AT3G16340 Length:1416 Species:Arabidopsis thaliana


Alignment Length:660 Identity:176/660 - (26%)
Similarity:304/660 - (46%) Gaps:104/660 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EDQELLIRGGSKHPSAEHLNNGDSGAASQSCINQGFGQAKNYGTLRPPSPPEDSGSGSGQLAENL 68
            |.|:.::   ||..:.|  |..::|:.|:|.      ..|. |.:.|.:|              |
plant   774 EKQQAVV---SKENTEE--NRAENGSKSKSI------DVKR-GMVLPFTP--------------L 812

  Fly    69 TYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHIPAPRKHLLKNVCGVAYPGELLAVMGSSG 133
            |.::.|::.:  |:.|..             ..|:.:...:..|||.|.||..||.|.|:||.||
plant   813 TMSFDNVNYY--VDMPKE-------------MKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSG 862

  Fly   134 AGKTTLLNALAFRSPQG-----IQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREH 193
            ||||||::.||.|...|     |::|        |.|...:.......|.:|:|:....:|.:|.
plant   863 AGKTTLMDVLAGRKTGGYIEGDIRIS--------GFPKRQETFARISGYCEQNDIHSPQVTVKES 919

  Fly   194 LIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTD 258
            ||:.|.:|:|:.:|..:::..||:|::.:.|...:..::|:|| :.|||..:||||..|.|.:.:
plant   920 LIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPG-ITGLSTEQRKRLTIAVELVAN 983

  Fly   259 PPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAE-GRVAFL 322
            |.::..||||||||:..|..|::.::.....|:||:.||||||.::||.||::||:.. |:|.:.
plant   984 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYA 1048

  Fly   323 G----TPSEAVDFFSYVGA--QCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFAISKVAR 381
            |    ...:.:::|..:..  :....||||.:.::|.::....::|     ....:::..|.:.:
plant  1049 GPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLE-----IDFAEHYKTSSLYQ 1108

  Fly   382 DMEQLLATKNLEKPLEQPENGYT--YKATWFM-----QFRAVLWRSWLSVLKEPLLVKVRLIQTT 439
            .      .|||.|.|..|..|.:  |.:|.|.     ||::.||:.|::..:.|.....|...|.
plant  1109 Q------NKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTL 1167

  Fly   440 MVAILIGLIFLGQQLTQVGVMNIN--------GAIFLFLTNMTFQNVFATINVFTSELPVFMREA 496
            ..|:::|.||     .:||....|        ||::..:..:...|..:...:...|..||.||.
plant  1168 AAAVMLGSIF-----WKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRER 1227

  Fly   497 RSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGY 561
            .:.:|....|.|.:.:.|:|..|.....:|.|.|.|:.....:..||....:..:.....|.:|.
plant  1228 AAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGM 1292

  Fly   562 LISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVP---VYLKWLSYLSWFRYANEGLLINQWA 623
            :....:.:..:|..........|.||.||.:....:|   ::..|:..::|..|   ||:::|:.
plant  1293 MTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVY---GLIVSQYG 1354

  Fly   624 DVE-----PG 628
            |||     ||
plant  1355 DVEDTIKVPG 1364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 163/596 (27%)
ABCG29NP_566543.1 PLN03140 1..1416 CDD:215599 176/660 (27%)
ABC_trans_N 54..141 CDD:291196
ABCG_PDR_domain1 156..402 CDD:213200
ABC2_membrane 503..709 CDD:279410
PDR_assoc 716..780 CDD:285559 2/5 (40%)
ABCG_PDR_domain2 811..1049 CDD:213199 90/275 (33%)
ABC2_membrane 1144..1351 CDD:279410 47/214 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.870

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