DRSC/TRiP Functional Genomics Resources

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Protein Alignment w and Abcg3l4

DIOPT Version :9

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_001032282.1 Gene:Abcg3l4 / 360997 RGDID:1588538 Length:652 Species:Rattus norvegicus


Alignment Length:669 Identity:178/669 - (26%)
Similarity:313/669 - (46%) Gaps:101/669 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PEDSGSGSGQL-AENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHIPAPRKHLLKNVC 117
            ||.:.|....| .|.:..::||:.....|.   ||: .|..:||.:   ||         |.::.
  Rat    21 PETNTSDPETLTGEAVVLSFHNISYIETVQ---SGF-PLCQKTRVM---ER---------LSSIS 69

  Fly   118 GVAYPGELLAVMGSSGAGKTTLLNALAF-RSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQD 181
            |:..|| |.|:||.....::.||:.||. |.|.|:    ||..|:||:|..| ..:....||..:
  Rat    70 GIMGPG-LNAIMGPQDGSRSLLLDVLAARRHPSGL----SGDILVNGKPRPA-NFKCTSGYVPHN 128

  Fly   182 DLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGER 246
            |:.:.::|.|::|.|.|.:.:|..:|..::..|:::|::.|.|.:.|:|        |..|...|
  Rat   129 DVVMHTVTVRDNLEFSAALCLPMTITRDEKRRRINEVLELLHLDEKQNT--------KPRSKELR 185

  Fly   247 KRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKI 311
            ||.:.|.|.:.|.|:|..|.||:.||..|...|:.||:::|.||||:|.:|:||...:|..||.:
  Rat   186 KRTSIAVELIADHPILFLDNPTTYLDFTTTTYVISVLRRMSMKGKTIIFSINQPQYSIFRFFDSL 250

  Fly   312 LLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVL------AVVPGREIESRDRI--- 367
            .|||.|::.|.|...:|:::|:..|       .||||::.::      ....|.|:.:.:.:   
  Rat   251 TLMASGKLMFHGPARDALEYFTSAG-------YPADFFLDIINGGFCDTEEDGHEVGNYEELFER 308

  Fly   368 -----AKICDNFAISKVARD----MEQLLATKNLEK--PLEQPENGYTYKATWFMQFRAVLWRSW 421
                 .|:.:.:|.|::..|    ::|:|..:.|::  .:|.     |....::.|...:.:||:
  Rat   309 QYQATKKLVNMYAQSRLHSDTRARLDQILGQQQLDRNSAVET-----TCATPFWHQLMWITYRSF 368

  Fly   422 LSVLKEPLLVKVRLIQTTMVAILIGLIF--LGQQLTQVGVMNINGAIFLFLTNMTFQNVFATINV 484
            .::...|....::.:...::|.|||:.|  |.....:|.:.  .|.::|.....:..:|||.: :
  Rat   369 KNIWGFPWATVIQAVIIAILAALIGIAFQVLKNDCNEVRIR--AGLLYLLTIFQSLTSVFAGV-L 430

  Fly   485 FTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALV 549
            |......|:.|..|..||...||.||.:|:|.....:|.....|.|.:.|.|..:..||..|..|
  Rat   431 FVINRHRFLHEHTSGYYRVSCYFFGKLLADLIPRRLLPSTIVLITYFIAGGRMSMSSFFAMLFTV 495

  Fly   550 TLVANVSTSFGYLISCASSSTSMALSVGP---PVIIP----------FLLFGGFFLNSGSVPVYL 601
            .::     .|        |.:|:.||:|.   .|.:|          .|:|.|..|.|||:|..|
  Rat   496 MML-----DF--------SVSSLPLSIGAGKNAVAVPTLFVTIYFVFMLIFSGLSLYSGSLPPKL 547

  Fly   602 KWLSYLSWFRYANEGLLINQW------ADVEPGEISCTSSNTTCPSSGKVILETLNFSAADLPLD 660
            .|:.|.|...||.:.||.|::      ::....|:|...:...|.....:.::.::.|:.....:
  Rat   548 SWIQYFSILHYAFKALLHNEFLGQNFCSEDRMEELSRCHNYVICAGEEFLAIQGIDLSSWGFWEN 612

  Fly   661 YVGLAILIVSFRVLAYLAL 679
            ::.||.:::....:.|:.|
  Rat   613 HLALACIMIILLTITYVQL 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 173/654 (26%)
Abcg3l4NP_001032282.1 3a01204 54..632 CDD:273361 168/632 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D209530at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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