Protein Alignment w and Abca4

DIOPT Version :9

• Sequence 1: NP_476787.1
• Gene: w / 31271
• FlyBaseID: FBgn0003996
• Length: 687
• Species: Drosophila melanogaster
• Sequence 2: NP_001101191.1
• Gene: Abca4 / 310836
• RGDID: 1309445
• Length: 2290
• Species: Rattus norvegicus
• Alignment Length: 422
• Identity: 95/422 - (22%)
• Similarity: 170/422 - (40%)
• Gaps: 128/422 - (30%)

  Fly    48 LRPPSPPEDS-------GSGSGQLAENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHI 105
            :..|..||||       |...|...:||.          .|.:|||  |..|:|....|
  Rat   885 IEDPEYPEDSFFERELPGLVPGVCVKNLV----------KVFEPGS--RPAVDRLNITF------ 931

  Fly   106 PAPRKHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVD--- 167
                           |..::.|.:|.:||||||.|:.|.     |:....||..|:.|:.::
  Rat   932 ---------------YENQITAFLGHNGAGKTTTLSILT-----GLLPPTSGTVLIGGKDIEISL 976

  Fly   168 --AKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHT 230
              .::....|   .|.::....||..||::|.|.:   :..::.:....::.::::..|...::.
  Rat   977 DAVRQSLGMC---PQHNILFHHLTVAEHILFYAQL---KGRSWEEARLEMEAMLEDTGLHHKRNE 1035

  Fly   231 IIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVIL 295
                  ..:.||||.:::|:.|...:.|..:::.||||||:|.::..|:..:|.|. :.|:|:|:
  Rat  1036 ------EAQDLSGGMQRKLSVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIM 1093

  Fly   296 -TIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFS---YV--------------------- 335
             |.|...::|  |.|:|.::::||:...|||....:.|.   |:
  Rat  1094 STHHMDEADL--LGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRCGCEGACS 1156

  Fly   336 ------GAQCPTNYNPADFYVQVLAVVPGREIESRDRI------AKICD-------------NF- 374
                  .|:||...:.    :....|:.|...|..|.:      ||:.:             ||
  Rat  1157 CTSKGFSARCPARVDE----ITEEQVLDGDVKELTDLVYHHVPEAKLVECIGQELIFLLPNKNFK 1217

  Fly   375 --AISKVARDMEQLLATKNL------EKPLEQ 398
              |.:.:.|::|:.||...|      :.|||:
  Rat  1218 QRAYASLFRELEETLADLGLSSFGISDTPLEE 1249

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
w	NP_476787.1	3a01204	68..687	CDD:273361	87/395 (22%)
Abca4	NP_001101191.1	rim_protein	1..2249	CDD:130324	95/422 (23%)
		ABC_subfamily_A	907..1126	CDD:213230	66/271 (24%)
		ABC_subfamily_A	1915..2135	CDD:213230

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	1	1.000